| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:33:38 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the BUS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 233/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BUS 1.55.0 (landing page) Yuanhua Liu
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | WARNINGS | |||||||||
| Package: BUS |
| Version: 1.55.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL BUS |
| StartedAt: 2023-01-28 03:57:02 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 03:57:06 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 4.0 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL BUS
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘BUS’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c BUS.cpp -o BUS.o
BUS.cpp: In function ‘SEXPREC* MINempirical(SEXP, SEXP, SEXP, SEXP, SEXP)’:
BUS.cpp:22:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
22 | for( int i=0; i<*ncols1; ++i )
| ^~~
In file included from /home/biocbuild/bbs-3.17-bioc/R/include/Rdefines.h:41,
from BUS.h:9,
from BUS.cpp:1:
/home/biocbuild/bbs-3.17-bioc/R/include/Rinternals.h:369:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
369 | #define UNPROTECT(n) Rf_unprotect(n)
| ^~~~~~~~~~~~
BUS.cpp:27:10: note: in expansion of macro ‘UNPROTECT’
27 | UNPROTECT(6);
| ^~~~~~~~~
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o BUS.so BUS.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-BUS/00new/BUS/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BUS)