Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:33:43 -0000 (Sun, 29 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the DeepPINCS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepPINCS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 486/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
DeepPINCS 1.7.0 (landing page) Dongmin Jung
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
Package: DeepPINCS |
Version: 1.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DeepPINCS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings DeepPINCS_1.7.0.tar.gz |
StartedAt: 2023-01-28 21:11:12 -0000 (Sat, 28 Jan 2023) |
EndedAt: 2023-01-28 21:17:26 -0000 (Sat, 28 Jan 2023) |
EllapsedTime: 373.8 seconds |
RetCode: 1 |
Status: ERROR |
CheckDir: DeepPINCS.Rcheck |
Warnings: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DeepPINCS.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings DeepPINCS_1.7.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/DeepPINCS.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘DeepPINCS/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘DeepPINCS’ version ‘1.7.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘DeepPINCS’ can be installed ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... WARNING Error in library(DeepPINCS, lib.loc = "/home/biocbuild/bbs-3.17-bioc/R/library") : there is no package called ‘DeepPINCS’ Execution halted It looks like this package has a loading problem when not on .libPaths: see the messages for details. * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE fit_cpi: no visible binding for global variable ‘compound’ fit_cpi: no visible binding for global variable ‘compound_args’ fit_cpi: no visible binding for global variable ‘protein’ fit_cpi: no visible binding for global variable ‘protein_args’ fit_cpi: no visible binding for global variable ‘max_atoms’ gcn_in_out : initialize: no visible global function definition for ‘super’ gcn_in_out : call: no visible binding for global variable ‘self’ gcn_in_out : <anonymous>: no visible binding for global variable ‘self’ gcn_in_out: no visible binding for global variable ‘temp_units’ multiple_sampling_generator : <anonymous>: no visible binding for global variable ‘batch_start’ Undefined global functions or variables: batch_start compound compound_args max_atoms protein protein_args self super temp_units * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... SKIPPED * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘DeepPINCS.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building ‘DeepPINCS.Rmd’ using rmarkdown /usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:98: UserWarning: unable to load libtensorflow_io_plugins.so: unable to open file: libtensorflow_io_plugins.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'] caused by: ["[Errno 2] The file to load file system plugin from does not exist.: '/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'"] warnings.warn(f"unable to load libtensorflow_io_plugins.so: {e}") /usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:104: UserWarning: file system plugins are not loaded: unable to open file: libtensorflow_io.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so'] caused by: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so: cannot open shared object file: No such file or directory'] warnings.warn(f"file system plugins are not loaded: {e}") Epoch 1/20 1/6 [====>.........................] - ETA: 11s - loss: 0.6961 - accuracy: 0.4375 3/6 [==============>...............] - ETA: 0s - loss: 0.6938 - accuracy: 0.4896 6/6 [==============================] - ETA: 0s - loss: 0.6922 - accuracy: 0.5057 6/6 [==============================] - 3s 132ms/step - loss: 0.6922 - accuracy: 0.5057 - val_loss: 0.6873 - val_accuracy: 0.5267 Epoch 2/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6871 - accuracy: 0.5312 4/6 [===================>..........] - ETA: 0s - loss: 0.6850 - accuracy: 0.5625 6/6 [==============================] - 0s 42ms/step - loss: 0.6832 - accuracy: 0.5714 - val_loss: 0.6834 - val_accuracy: 0.5467 Epoch 3/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6910 - accuracy: 0.4844 4/6 [===================>..........] - ETA: 0s - loss: 0.6771 - accuracy: 0.6094 6/6 [==============================] - 0s 32ms/step - loss: 0.6781 - accuracy: 0.5914 - val_loss: 0.6795 - val_accuracy: 0.5667 Epoch 4/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6728 - accuracy: 0.6250 4/6 [===================>..........] - ETA: 0s - loss: 0.6728 - accuracy: 0.5898 6/6 [==============================] - 0s 33ms/step - loss: 0.6728 - accuracy: 0.5914 - val_loss: 0.6755 - val_accuracy: 0.6200 Epoch 5/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6677 - accuracy: 0.6562 4/6 [===================>..........] - ETA: 0s - loss: 0.6697 - accuracy: 0.6094 6/6 [==============================] - 0s 34ms/step - loss: 0.6674 - accuracy: 0.6086 - val_loss: 0.6718 - val_accuracy: 0.6333 Epoch 6/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6621 - accuracy: 0.6562 4/6 [===================>..........] - ETA: 0s - loss: 0.6614 - accuracy: 0.6250 6/6 [==============================] - 0s 43ms/step - loss: 0.6617 - accuracy: 0.6171 - val_loss: 0.6679 - val_accuracy: 0.6333 Epoch 7/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6670 - accuracy: 0.5469 4/6 [===================>..........] - ETA: 0s - loss: 0.6571 - accuracy: 0.6406 6/6 [==============================] - 0s 34ms/step - loss: 0.6572 - accuracy: 0.6343 - val_loss: 0.6633 - val_accuracy: 0.6133 Epoch 8/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6609 - accuracy: 0.5938 4/6 [===================>..........] - ETA: 0s - loss: 0.6512 - accuracy: 0.6680 6/6 [==============================] - 0s 33ms/step - loss: 0.6488 - accuracy: 0.6629 - val_loss: 0.6592 - val_accuracy: 0.6333 Epoch 9/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6715 - accuracy: 0.5781 4/6 [===================>..........] - ETA: 0s - loss: 0.6474 - accuracy: 0.6445 6/6 [==============================] - 0s 34ms/step - loss: 0.6422 - accuracy: 0.6571 - val_loss: 0.6547 - val_accuracy: 0.6400 Epoch 10/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6560 - accuracy: 0.6562 4/6 [===================>..........] - ETA: 0s - loss: 0.6386 - accuracy: 0.6406 6/6 [==============================] - 0s 34ms/step - loss: 0.6343 - accuracy: 0.6657 - val_loss: 0.6487 - val_accuracy: 0.6267 Epoch 11/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6214 - accuracy: 0.7031 4/6 [===================>..........] - ETA: 0s - loss: 0.6263 - accuracy: 0.6758 6/6 [==============================] - 0s 34ms/step - loss: 0.6250 - accuracy: 0.6943 - val_loss: 0.6422 - val_accuracy: 0.6533 Epoch 12/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6341 - accuracy: 0.6562 4/6 [===================>..........] - ETA: 0s - loss: 0.6106 - accuracy: 0.7148 6/6 [==============================] - 0s 34ms/step - loss: 0.6122 - accuracy: 0.7143 - val_loss: 0.6341 - val_accuracy: 0.6600 Epoch 13/20 1/6 [====>.........................] - ETA: 0s - loss: 0.6031 - accuracy: 0.7031 4/6 [===================>..........] - ETA: 0s - loss: 0.5915 - accuracy: 0.7617 6/6 [==============================] - 0s 34ms/step - loss: 0.5998 - accuracy: 0.7343 - val_loss: 0.6255 - val_accuracy: 0.6533 Epoch 14/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5912 - accuracy: 0.7031 4/6 [===================>..........] - ETA: 0s - loss: 0.5807 - accuracy: 0.7734 6/6 [==============================] - 0s 35ms/step - loss: 0.5847 - accuracy: 0.7600 - val_loss: 0.6172 - val_accuracy: 0.6733 Epoch 15/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5807 - accuracy: 0.7656 3/6 [==============>...............] - ETA: 0s - loss: 0.5590 - accuracy: 0.8021 6/6 [==============================] - ETA: 0s - loss: 0.5715 - accuracy: 0.7771 6/6 [==============================] - 0s 34ms/step - loss: 0.5715 - accuracy: 0.7771 - val_loss: 0.6081 - val_accuracy: 0.6600 Epoch 16/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5468 - accuracy: 0.8281 4/6 [===================>..........] - ETA: 0s - loss: 0.5617 - accuracy: 0.8203 6/6 [==============================] - 0s 36ms/step - loss: 0.5528 - accuracy: 0.8229 - val_loss: 0.5988 - val_accuracy: 0.6600 Epoch 17/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5284 - accuracy: 0.8438 4/6 [===================>..........] - ETA: 0s - loss: 0.5171 - accuracy: 0.8594 6/6 [==============================] - 0s 33ms/step - loss: 0.5362 - accuracy: 0.8171 - val_loss: 0.5894 - val_accuracy: 0.6733 Epoch 18/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5413 - accuracy: 0.7969 4/6 [===================>..........] - ETA: 0s - loss: 0.5229 - accuracy: 0.8203 6/6 [==============================] - 0s 34ms/step - loss: 0.5171 - accuracy: 0.8343 - val_loss: 0.5798 - val_accuracy: 0.7200 Epoch 19/20 1/6 [====>.........................] - ETA: 0s - loss: 0.5171 - accuracy: 0.8281 4/6 [===================>..........] - ETA: 0s - loss: 0.5100 - accuracy: 0.8633 6/6 [==============================] - 0s 34ms/step - loss: 0.5036 - accuracy: 0.8514 - val_loss: 0.5735 - val_accuracy: 0.7000 Epoch 20/20 1/6 [====>.........................] - ETA: 0s - loss: 0.4933 - accuracy: 0.8438 3/6 [==============>...............] - ETA: 0s - loss: 0.4829 - accuracy: 0.8646 6/6 [==============================] - ETA: 0s - loss: 0.4807 - accuracy: 0.8771 6/6 [==============================] - 0s 37ms/step - loss: 0.4807 - accuracy: 0.8771 - val_loss: 0.5633 - val_accuracy: 0.7267 1/5 [=====>........................] - ETA: 0s 5/5 [==============================] - 0s 6ms/step Epoch 1/20 1/11 [=>............................] - ETA: 17s - loss: 0.7005 - accuracy: 0.4844 11/11 [==============================] - ETA: 0s - loss: 0.6896 - accuracy: 0.5257 11/11 [==============================] - 2s 37ms/step - loss: 0.6896 - accuracy: 0.5257 - val_loss: 0.6799 - val_accuracy: 0.5433 Epoch 2/20 1/11 [=>............................] - ETA: 0s - loss: 0.6375 - accuracy: 0.8125 11/11 [==============================] - 0s 9ms/step - loss: 0.6275 - accuracy: 0.7271 - val_loss: 0.6558 - val_accuracy: 0.6167 Epoch 3/20 1/11 [=>............................] - ETA: 0s - loss: 0.5749 - accuracy: 0.8125 11/11 [==============================] - 0s 17ms/step - loss: 0.5775 - accuracy: 0.7614 - val_loss: 0.6292 - val_accuracy: 0.6267 Epoch 4/20 1/11 [=>............................] - ETA: 0s - loss: 0.5323 - accuracy: 0.8438 11/11 [==============================] - 0s 16ms/step - loss: 0.5217 - accuracy: 0.8071 - val_loss: 0.6086 - val_accuracy: 0.6667 Epoch 5/20 1/11 [=>............................] - ETA: 0s - loss: 0.4838 - accuracy: 0.7969 11/11 [==============================] - 0s 9ms/step - loss: 0.4704 - accuracy: 0.8300 - val_loss: 0.5944 - val_accuracy: 0.6700 Epoch 6/20 1/11 [=>............................] - ETA: 0s - loss: 0.3773 - accuracy: 0.9219 11/11 [==============================] - 0s 10ms/step - loss: 0.4231 - accuracy: 0.8671 - val_loss: 0.5795 - val_accuracy: 0.6967 Epoch 7/20 1/11 [=>............................] - ETA: 0s - loss: 0.4458 - accuracy: 0.8125 11/11 [==============================] - 0s 10ms/step - loss: 0.3783 - accuracy: 0.8900 - val_loss: 0.5732 - val_accuracy: 0.7067 Epoch 8/20 1/11 [=>............................] - ETA: 0s - loss: 0.3495 - accuracy: 0.8594 11/11 [==============================] - 0s 10ms/step - loss: 0.3361 - accuracy: 0.9100 - val_loss: 0.5625 - val_accuracy: 0.7133 Epoch 9/20 1/11 [=>............................] - ETA: 0s - loss: 0.3232 - accuracy: 0.9062 11/11 [==============================] - 0s 9ms/step - loss: 0.2982 - accuracy: 0.9257 - val_loss: 0.5555 - val_accuracy: 0.7400 Epoch 10/20 1/11 [=>............................] - ETA: 0s - loss: 0.2686 - accuracy: 0.9531 11/11 [==============================] - 0s 9ms/step - loss: 0.2661 - accuracy: 0.9329 - val_loss: 0.5511 - val_accuracy: 0.7267 Epoch 11/20 1/11 [=>............................] - ETA: 0s - loss: 0.2489 - accuracy: 0.9531 11/11 [==============================] - 0s 9ms/step - loss: 0.2370 - accuracy: 0.9400 - val_loss: 0.5482 - val_accuracy: 0.7233 Epoch 12/20 1/11 [=>............................] - ETA: 0s - loss: 0.2560 - accuracy: 0.9062 11/11 [==============================] - 0s 10ms/step - loss: 0.2110 - accuracy: 0.9486 - val_loss: 0.5527 - val_accuracy: 0.7200 Epoch 13/20 1/11 [=>............................] - ETA: 0s - loss: 0.1827 - accuracy: 0.9844 11/11 [==============================] - 0s 9ms/step - loss: 0.1879 - accuracy: 0.9671 - val_loss: 0.5548 - val_accuracy: 0.7267 Epoch 14/20 1/11 [=>............................] - ETA: 0s - loss: 0.1519 - accuracy: 0.9844 11/11 [==============================] - 0s 9ms/step - loss: 0.1675 - accuracy: 0.9657 - val_loss: 0.5532 - val_accuracy: 0.7367 Epoch 15/20 1/11 [=>............................] - ETA: 0s - loss: 0.1228 - accuracy: 0.9688 11/11 [==============================] - 0s 9ms/step - loss: 0.1496 - accuracy: 0.9800 - val_loss: 0.5593 - val_accuracy: 0.7300 Epoch 16/20 1/11 [=>............................] - ETA: 0s - loss: 0.1257 - accuracy: 0.9844 11/11 [==============================] - 0s 9ms/step - loss: 0.1345 - accuracy: 0.9814 - val_loss: 0.5618 - val_accuracy: 0.7333 Epoch 17/20 1/11 [=>............................] - ETA: 0s - loss: 0.0822 - accuracy: 1.0000 11/11 [==============================] - 0s 14ms/step - loss: 0.1212 - accuracy: 0.9843 - val_loss: 0.5724 - val_accuracy: 0.7300 Epoch 18/20 1/11 [=>............................] - ETA: 0s - loss: 0.0909 - accuracy: 1.0000 11/11 [==============================] - 0s 10ms/step - loss: 0.1096 - accuracy: 0.9857 - val_loss: 0.5765 - val_accuracy: 0.7433 Epoch 19/20 1/11 [=>............................] - ETA: 0s - loss: 0.0852 - accuracy: 1.0000 11/11 [==============================] - 0s 10ms/step - loss: 0.0987 - accuracy: 0.9900 - val_loss: 0.5804 - val_accuracy: 0.7400 Epoch 20/20 1/11 [=>............................] - ETA: 0s - loss: 0.0865 - accuracy: 1.0000 11/11 [==============================] - 0s 9ms/step - loss: 0.0881 - accuracy: 0.9914 - val_loss: 0.5913 - val_accuracy: 0.7300 1/10 [==>...........................] - ETA: 1s 10/10 [==============================] - 0s 2ms/step Epoch 1/20 1/55 [..............................] - ETA: 2:03 - loss: 0.6933 - accuracy: 0.4219 11/55 [=====>........................] - ETA: 0s - loss: 0.6930 - accuracy: 0.4901 20/55 [=========>....................] - ETA: 0s - loss: 0.6928 - accuracy: 0.5008 29/55 [==============>...............] - ETA: 0s - loss: 0.6927 - accuracy: 0.5043 38/55 [===================>..........] - ETA: 0s - loss: 0.6927 - accuracy: 0.5082 50/55 [==========================>...] - ETA: 0s - loss: 0.6923 - accuracy: 0.5163 55/55 [==============================] - 3s 12ms/step - loss: 0.6921 - accuracy: 0.5160 - val_loss: 0.6906 - val_accuracy: 0.5267 Epoch 2/20 1/55 [..............................] - ETA: 0s - loss: 0.6846 - accuracy: 0.5938 13/55 [======>.......................] - ETA: 0s - loss: 0.6837 - accuracy: 0.5805 24/55 [============>.................] - ETA: 0s - loss: 0.6827 - accuracy: 0.5723 36/55 [==================>...........] - ETA: 0s - loss: 0.6813 - accuracy: 0.5877 48/55 [=========================>....] - ETA: 0s - loss: 0.6800 - accuracy: 0.5960 55/55 [==============================] - 0s 6ms/step - loss: 0.6795 - accuracy: 0.5977 - val_loss: 0.6820 - val_accuracy: 0.5827 Epoch 3/20 1/55 [..............................] - ETA: 0s - loss: 0.6552 - accuracy: 0.7188 12/55 [=====>........................] - ETA: 0s - loss: 0.6557 - accuracy: 0.7331 23/55 [===========>..................] - ETA: 0s - loss: 0.6499 - accuracy: 0.7188 33/55 [=================>............] - ETA: 0s - loss: 0.6476 - accuracy: 0.7107 43/55 [======================>.......] - ETA: 0s - loss: 0.6405 - accuracy: 0.7144 53/55 [===========================>..] - ETA: 0s - loss: 0.6351 - accuracy: 0.7155 55/55 [==============================] - 0s 7ms/step - loss: 0.6350 - accuracy: 0.7134 - val_loss: 0.6673 - val_accuracy: 0.5813 Epoch 4/20 1/55 [..............................] - ETA: 0s - loss: 0.5553 - accuracy: 0.8438 11/55 [=====>........................] - ETA: 0s - loss: 0.5756 - accuracy: 0.7727 22/55 [===========>..................] - ETA: 0s - loss: 0.5686 - accuracy: 0.7571 32/55 [================>.............] - ETA: 0s - loss: 0.5576 - accuracy: 0.7632 42/55 [=====================>........] - ETA: 0s - loss: 0.5499 - accuracy: 0.7649 54/55 [============================>.] - ETA: 0s - loss: 0.5450 - accuracy: 0.7650Killed * checking PDF version of manual ... OK * DONE Status: 1 ERROR, 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/DeepPINCS.Rcheck/00check.log’ for details.
DeepPINCS.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL DeepPINCS ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘DeepPINCS’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeepPINCS)
DeepPINCS.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(DeepPINCS) Loading required package: keras > > test_check("DeepPINCS") /usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:98: UserWarning: unable to load libtensorflow_io_plugins.so: unable to open file: libtensorflow_io_plugins.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'] caused by: ["[Errno 2] The file to load file system plugin from does not exist.: '/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'"] warnings.warn(f"unable to load libtensorflow_io_plugins.so: {e}") /usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:104: UserWarning: file system plugins are not loaded: unable to open file: libtensorflow_io.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so'] caused by: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so: cannot open shared object file: No such file or directory'] warnings.warn(f"file system plugins are not loaded: {e}") 2023-01-28 21:13:23.424644: W tensorflow/tsl/framework/cpu_allocator_impl.cc:82] Allocation of 15786624 exceeds 10% of free system memory. 2023-01-28 21:13:23.425134: W tensorflow/tsl/framework/cpu_allocator_impl.cc:82] Allocation of 15786624 exceeds 10% of free system memory. 1/7 [===>..........................] - ETA: 14s - loss: 0.6954 - accuracy: 0.43752023-01-28 21:13:23.436276: W tensorflow/tsl/framework/cpu_allocator_impl.cc:82] Allocation of 15786624 exceeds 10% of free system memory. 2023-01-28 21:13:23.436546: W tensorflow/tsl/framework/cpu_allocator_impl.cc:82] Allocation of 15786624 exceeds 10% of free system memory. 2023-01-28 21:13:23.446366: W tensorflow/tsl/framework/cpu_allocator_impl.cc:82] Allocation of 15786624 exceeds 10% of free system memory. 7/7 [==============================] - ETA: 0s - loss: 0.6928 - accuracy: 0.4700 7/7 [==============================] - 3s 89ms/step - loss: 0.6928 - accuracy: 0.4700 - val_loss: 0.6916 - val_accuracy: 0.4800 1/7 [===>..........................] - ETA: 16s - loss: 0.6936 - accuracy: 0.6250 5/7 [====================>.........] - ETA: 0s - loss: 0.6911 - accuracy: 0.5375 7/7 [==============================] - 9s 1000ms/step - loss: 0.6907 - accuracy: 0.5200 - val_loss: 0.6910 - val_accuracy: 0.4800 1/7 [===>..........................] - ETA: 16s - loss: 0.7147 - accuracy: 0.3750 6/7 [========================>.....] - ETA: 0s - loss: 0.6978 - accuracy: 0.4688 7/7 [==============================] - 3s 76ms/step - loss: 0.6975 - accuracy: 0.4700 - val_loss: 0.6918 - val_accuracy: 0.5300 1/1 [==============================] - ETA: 0s 1/1 [==============================] - 0s 277ms/step [ FAIL 0 | WARN 1 | SKIP 0 | PASS 11 ] [ FAIL 0 | WARN 1 | SKIP 0 | PASS 11 ] > > proc.time() user system elapsed 100.799 11.904 147.893