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This page was generated on 2023-01-29 16:33:46 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ELMER package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELMER.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 593/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ELMER 2.23.0 (landing page) Tiago Chedraoui Silva
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: ELMER |
| Version: 2.23.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER |
| StartedAt: 2023-01-28 08:10:50 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 08:21:59 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 669.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER ### ############################################################################## ############################################################################## * checking for file ‘ELMER/DESCRIPTION’ ... OK * preparing ‘ELMER’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘analysis_data_input.Rmd’ using rmarkdown --- finished re-building ‘analysis_data_input.Rmd’ --- re-building ‘analysis_diff_meth.Rmd’ using rmarkdown --- finished re-building ‘analysis_diff_meth.Rmd’ --- re-building ‘analysis_get_pair.Rmd’ using rmarkdown --- finished re-building ‘analysis_get_pair.Rmd’ --- re-building ‘analysis_gui.Rmd’ using rmarkdown --- finished re-building ‘analysis_gui.Rmd’ --- re-building ‘analysis_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘analysis_motif_enrichment.Rmd’ --- re-building ‘analysis_regulatory_tf.Rmd’ using rmarkdown --- finished re-building ‘analysis_regulatory_tf.Rmd’ --- re-building ‘index.Rmd’ using rmarkdown --- finished re-building ‘index.Rmd’ --- re-building ‘input.Rmd’ using rmarkdown Quitting from lines 133-190 (input.Rmd) Error: processing vignette 'input.Rmd' failed with diagnostics: failed to load resource name: EH3675 title: HM450.hg38.manifest reason: error in evaluating the argument 'x' in selecting a method for function 'get': error reading from connection --- failed re-building ‘input.Rmd’ --- re-building ‘pipe.Rmd’ using rmarkdown --- finished re-building ‘pipe.Rmd’ --- re-building ‘plots_TF.Rmd’ using rmarkdown Warning: ggrepel: 66 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘plots_TF.Rmd’ --- re-building ‘plots_heatmap.Rmd’ using rmarkdown --- finished re-building ‘plots_heatmap.Rmd’ --- re-building ‘plots_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘plots_motif_enrichment.Rmd’ --- re-building ‘plots_scatter.Rmd’ using rmarkdown --- finished re-building ‘plots_scatter.Rmd’ --- re-building ‘plots_schematic.Rmd’ using rmarkdown --- finished re-building ‘plots_schematic.Rmd’ --- re-building ‘usecase.Rmd’ using rmarkdown --- finished re-building ‘usecase.Rmd’ SUMMARY: processing the following file failed: ‘input.Rmd’ Error: Vignette re-building failed. Execution halted