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This page was generated on 2023-01-29 16:33:50 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for GenomicDataCommons on kunpeng1


To the developers/maintainers of the GenomicDataCommons package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GenomicDataCommons.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 771/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GenomicDataCommons 1.23.1  (landing page)
Sean Davis
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/GenomicDataCommons
git_branch: master
git_last_commit: b32e626
git_last_commit_date: 2022-12-08 17:23:54 -0000 (Thu, 08 Dec 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: GenomicDataCommons
Version: 1.23.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons
StartedAt: 2023-01-28 08:54:14 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 08:59:19 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 304.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons
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* checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK
* preparing ‘GenomicDataCommons’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘overview.Rmd’ using rmarkdown
Quitting from lines 598-600 (overview.Rmd) 
Error: processing vignette 'overview.Rmd' failed with diagnostics:
OpenSSL SSL_read: error:0A000126:SSL routines::unexpected eof while reading, errno 0
--- failed re-building ‘overview.Rmd’

--- re-building ‘questions-and-answers.Rmd’ using rmarkdown
--- finished re-building ‘questions-and-answers.Rmd’

--- re-building ‘somatic_mutations.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpC9SHjs/Rbuild172c8e74d1495a/GenomicDataCommons/vignettes/somatic_mutations_files/figure-html/unnamed-chunk-14-1.png" but not available.
--- finished re-building ‘somatic_mutations.Rmd’

SUMMARY: processing the following file failed:
  ‘overview.Rmd’

Error: Vignette re-building failed.
Execution halted