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This page was generated on 2023-01-29 16:34:01 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for MSnbase on kunpeng1


To the developers/maintainers of the MSnbase package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MSnbase.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1264/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MSnbase 2.25.1  (landing page)
Laurent Gatto
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/MSnbase
git_branch: master
git_last_commit: 1e1719c
git_last_commit_date: 2022-12-21 13:40:15 -0000 (Wed, 21 Dec 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: MSnbase
Version: 2.25.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
StartedAt: 2023-01-28 11:36:56 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 11:38:22 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 86.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MSnbase
###
##############################################################################
##############################################################################


* checking for file ‘MSnbase/DESCRIPTION’ ... OK
* preparing ‘MSnbase’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘v01-MSnbase-demo.Rmd’ using rmarkdown
Quitting from lines 319-323 (v01-MSnbase-demo.Rmd) 
Error: processing vignette 'v01-MSnbase-demo.Rmd' failed with diagnostics:
inherits(x, "mzR") is not TRUE
--- failed re-building ‘v01-MSnbase-demo.Rmd’

--- re-building ‘v02-MSnbase-io.Rmd’ using rmarkdown
Quitting from lines 21-24 (v02-MSnbase-io.Rmd) 
Error: processing vignette 'v02-MSnbase-io.Rmd' failed with diagnostics:
there is no package called 'pRolocdata'
--- failed re-building ‘v02-MSnbase-io.Rmd’

--- re-building ‘v03-MSnbase-centroiding.Rmd’ using rmarkdown
Quitting from lines 65-72 (v03-MSnbase-centroiding.Rmd) 
Error: processing vignette 'v03-MSnbase-centroiding.Rmd' failed with diagnostics:
there is no package called 'msdata'
--- failed re-building ‘v03-MSnbase-centroiding.Rmd’

--- re-building ‘v04-benchmarking.Rmd’ using rmarkdown
Quitting from lines 43-47 (v04-benchmarking.Rmd) 
Error: processing vignette 'v04-benchmarking.Rmd' failed with diagnostics:
there is no package called 'msdata'
--- failed re-building ‘v04-benchmarking.Rmd’

--- re-building ‘v05-MSnbase-development.Rmd’ using rmarkdown
--- finished re-building ‘v05-MSnbase-development.Rmd’

SUMMARY: processing the following files failed:
  ‘v01-MSnbase-demo.Rmd’ ‘v02-MSnbase-io.Rmd’
  ‘v03-MSnbase-centroiding.Rmd’ ‘v04-benchmarking.Rmd’

Error: Vignette re-building failed.
Execution halted