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This page was generated on 2023-01-29 16:34:04 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for ORFik on kunpeng1


To the developers/maintainers of the ORFik package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ORFik.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1400/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ORFik 1.19.6  (landing page)
Haakon Tjeldnes
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/ORFik
git_branch: master
git_last_commit: d5e3a6d
git_last_commit_date: 2023-01-26 21:51:56 -0000 (Thu, 26 Jan 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: ORFik
Version: 1.19.6
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ORFik
StartedAt: 2023-01-28 12:19:02 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 12:21:26 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 143.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ORFik
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* checking for file ‘ORFik/DESCRIPTION’ ... OK
* preparing ‘ORFik’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Annotation_Alignment.Rmd’ using rmarkdown
--- finished re-building ‘Annotation_Alignment.Rmd’

--- re-building ‘ORFikExperiment.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/Rtmp9wuEVn/Rbuild1a4da3c61eb2e/ORFik/vignettes/ORFikExperiment_files/figure-html/unnamed-chunk-21-1.png" but not available.
The magick package is required to crop "/tmp/Rtmp9wuEVn/Rbuild1a4da3c61eb2e/ORFik/vignettes/ORFikExperiment_files/figure-html/unnamed-chunk-21-2.png" but not available.
--- finished re-building ‘ORFikExperiment.Rmd’

--- re-building ‘ORFikOverview.Rmd’ using rmarkdown
Quitting from lines 61-65 (ORFikOverview.Rmd) 
Error: processing vignette 'ORFikOverview.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
--- failed re-building ‘ORFikOverview.Rmd’

--- re-building ‘Ribo-seq_pipeline.Rmd’ using rmarkdown
--- finished re-building ‘Ribo-seq_pipeline.Rmd’

SUMMARY: processing the following file failed:
  ‘ORFikOverview.Rmd’

Error: Vignette re-building failed.
Execution halted