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This page was generated on 2023-01-29 16:34:05 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for PhosR on kunpeng1


To the developers/maintainers of the PhosR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/PhosR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1466/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
PhosR 1.9.1  (landing page)
Taiyun Kim
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/PhosR
git_branch: master
git_last_commit: c63dd90
git_last_commit_date: 2022-12-02 05:11:26 -0000 (Fri, 02 Dec 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: PhosR
Version: 1.9.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PhosR
StartedAt: 2023-01-28 12:40:59 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 12:42:00 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 61.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data PhosR
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* checking for file ‘PhosR/DESCRIPTION’ ... OK
* preparing ‘PhosR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘PhosR.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-19-1.png" but not available.
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-29-1.png" but not available.
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/tmp/RtmpSF57nQ/Rbuild1aa10e2bceab45/PhosR/vignettes/PhosR_files/figure-html/unnamed-chunk-33-1.png" but not available.
Quitting from lines 489-498 (PhosR.Rmd) 
Error: processing vignette 'PhosR.Rmd' failed with diagnostics:
there is no package called 'reactome.db'
--- failed re-building ‘PhosR.Rmd’

SUMMARY: processing the following file failed:
  ‘PhosR.Rmd’

Error: Vignette re-building failed.
Execution halted