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This page was generated on 2023-01-29 16:34:14 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SIAMCAT package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SIAMCAT.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1847/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SIAMCAT 2.3.0 (landing page) Jakob Wirbel
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: SIAMCAT |
| Version: 2.3.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT |
| StartedAt: 2023-01-28 15:04:49 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 15:31:49 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 1620.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SIAMCAT ### ############################################################################## ############################################################################## * checking for file ‘SIAMCAT/DESCRIPTION’ ... OK * preparing ‘SIAMCAT’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘SIAMCAT_confounder.Rmd’ using rmarkdown Quitting from lines 160-179 (SIAMCAT_confounder.Rmd) Error: processing vignette 'SIAMCAT_confounder.Rmd' failed with diagnostics: cannot read from connection --- failed re-building ‘SIAMCAT_confounder.Rmd’ --- re-building ‘SIAMCAT_holdout.Rmd’ using rmarkdown --- finished re-building ‘SIAMCAT_holdout.Rmd’ --- re-building ‘SIAMCAT_meta.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_meta_files/figure-html/heatmap-1.png" but not available. The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_meta_files/figure-html/plot_auroc-1.png" but not available. The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_meta_files/figure-html/plot_weights_heatmap-1.png" but not available. --- finished re-building ‘SIAMCAT_meta.Rmd’ --- re-building ‘SIAMCAT_ml_pitfalls.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_ml_pitfalls_files/figure-html/plot_auroc-1.png" but not available. The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_ml_pitfalls_files/figure-html/hmp_samples-1.png" but not available. The magick package is required to crop "/tmp/RtmpnSfpWi/Rbuild1cc6b8564da10f/SIAMCAT/vignettes/SIAMCAT_ml_pitfalls_files/figure-html/plot_results_db-1.png" but not available. --- finished re-building ‘SIAMCAT_ml_pitfalls.Rmd’ --- re-building ‘SIAMCAT_read-in.Rmd’ using rmarkdown --- finished re-building ‘SIAMCAT_read-in.Rmd’ --- re-building ‘SIAMCAT_vignette.Rmd’ using rmarkdown --- finished re-building ‘SIAMCAT_vignette.Rmd’ SUMMARY: processing the following file failed: ‘SIAMCAT_confounder.Rmd’ Error: Vignette re-building failed. Execution halted