| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:34:15 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the SimBu package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SimBu.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1863/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| SimBu 1.1.2 (landing page) Alexander Dietrich
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: SimBu |
| Version: 1.1.2 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SimBu |
| StartedAt: 2023-01-28 15:08:28 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 15:09:20 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 52.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SimBu
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* checking for file ‘SimBu/DESCRIPTION’ ... OK
* preparing ‘SimBu’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SimBu.Rmd’ using rmarkdown
Warning: The vignette title specified in \VignetteIndexEntry{} is different from the title in the YAML metadata. The former is "Getting started", and the latter is "Getting started with SimBu". If that is intentional, you may set options(rmarkdown.html_vignette.check_title = FALSE) to suppress this check.
--- finished re-building ‘SimBu.Rmd’
--- re-building ‘sfaira_vignette.Rmd’ using rmarkdown
--- finished re-building ‘sfaira_vignette.Rmd’
--- re-building ‘simulator_scaling_factors.Rmd’ using rmarkdown
--- finished re-building ‘simulator_scaling_factors.Rmd’
--- re-building ‘simulator_input_output.Rmd’ using knitr
PREFIX=/home/biocbuild/.cache/R/basilisk/1.11.2/0
Unpacking payload ...
/home/biocbuild/.cache/R/basilisk/Miniconda3-py38_4.12.0-Linux-x86_64.sh: line 412: /home/biocbuild/.cache/R/basilisk/1.11.2/0/conda.exe: cannot execute binary file: Exec format error
/home/biocbuild/.cache/R/basilisk/Miniconda3-py38_4.12.0-Linux-x86_64.sh: line 414: /home/biocbuild/.cache/R/basilisk/1.11.2/0/conda.exe: cannot execute binary file: Exec format error
Quitting from lines 95-104 (simulator_input_output.Rmd)
Error: processing vignette 'simulator_input_output.Rmd' failed with diagnostics:
conda installation failed with status code '1'
--- failed re-building ‘simulator_input_output.Rmd’
SUMMARY: processing the following file failed:
‘simulator_input_output.Rmd’
Error: Vignette re-building failed.
Execution halted