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This page was generated on 2023-01-29 16:34:20 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for VAExprs on kunpeng1


To the developers/maintainers of the VAExprs package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/VAExprs.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 2109/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VAExprs 1.5.0  (landing page)
Dongmin Jung
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/VAExprs
git_branch: master
git_last_commit: 1dc2e3f
git_last_commit_date: 2022-11-01 15:25:23 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: VAExprs
Version: 1.5.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VAExprs
StartedAt: 2023-01-28 16:35:09 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 16:38:19 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 189.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VAExprs
###
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* checking for file ‘VAExprs/DESCRIPTION’ ... OK
* preparing ‘VAExprs’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘VAExprs.Rmd’ using rmarkdown
/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:98: UserWarning: unable to load libtensorflow_io_plugins.so: unable to open file: libtensorflow_io_plugins.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so']
caused by: ["[Errno 2] The file to load file system plugin from does not exist.: '/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io_plugins.so'"]
  warnings.warn(f"unable to load libtensorflow_io_plugins.so: {e}")
/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/__init__.py:104: UserWarning: file system plugins are not loaded: unable to open file: libtensorflow_io.so, from paths: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so']
caused by: ['/usr/local/lib/python3.10/dist-packages/tensorflow_io/python/ops/libtensorflow_io.so: cannot open shared object file: No such file or directory']
  warnings.warn(f"file system plugins are not loaded: {e}")
Train on 300 samples, validate on 300 samples
Epoch 1/100
WARNING:tensorflow:OMP_NUM_THREADS is no longer used by the default Keras config. To configure the number of threads, use tf.config.threading APIs.
2023-01-28 16:36:11.371570: I tensorflow/compiler/mlir/mlir_graph_optimization_pass.cc:357] MLIR V1 optimization pass is not enabled
2023-01-28 16:36:11.427569: W tensorflow/c/c_api.cc:291] Operation '{name:'training/Adam/z_log_stddev/bias/m/Assign' id:490 op device:{requested: '', assigned: ''} def:{{{node training/Adam/z_log_stddev/bias/m/Assign}} = AssignVariableOp[_has_manual_control_dependencies=true, dtype=DT_FLOAT, validate_shape=false](training/Adam/z_log_stddev/bias/m, training/Adam/z_log_stddev/bias/m/Initializer/zeros)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
/usr/local/lib/python3.10/dist-packages/keras/engine/training_v1.py:2333: UserWarning: `Model.state_updates` will be removed in a future version. This property should not be used in TensorFlow 2.0, as `updates` are applied automatically.
  updates = self.state_updates
2023-01-28 16:36:11.849529: W tensorflow/c/c_api.cc:291] Operation '{name:'loss/mul' id:210 op device:{requested: '', assigned: ''} def:{{{node loss/mul}} = Mul[T=DT_FLOAT, _has_manual_control_dependencies=true](loss/mul/x, loss/dense_2_loss/value)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
Epoch 2/100
Epoch 3/100
Epoch 4/100
Epoch 5/100
Epoch 6/100
Epoch 7/100
Epoch 8/100
Epoch 9/100
Epoch 10/100
Epoch 11/100
Epoch 12/100
Epoch 13/100
Epoch 14/100
Epoch 15/100
Epoch 16/100
Epoch 17/100
Epoch 18/100
Epoch 19/100
Epoch 20/100
Epoch 21/100
Epoch 22/100
Epoch 23/100
Epoch 24/100
Epoch 25/100
Epoch 26/100
Epoch 27/100
Epoch 28/100
Epoch 29/100
Epoch 30/100
Epoch 31/100
Epoch 32/100
Epoch 33/100
Epoch 34/100
Epoch 35/100
Epoch 36/100
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Epoch 40/100
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Epoch 42/100
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Epoch 44/100
Epoch 45/100
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Epoch 47/100
Epoch 48/100
Epoch 49/100
Epoch 50/100
Epoch 51/100
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Epoch 54/100
Epoch 55/100
Epoch 56/100
Epoch 57/100
Epoch 58/100
Epoch 59/100
Epoch 60/100
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Epoch 63/100
Epoch 64/100
Epoch 65/100
Epoch 66/100
Epoch 67/100
Epoch 68/100
Epoch 69/100
Epoch 70/100
Epoch 71/100
Epoch 72/100
Epoch 73/100
Epoch 74/100
Epoch 75/100
Epoch 76/100
Epoch 77/100
Epoch 78/100
Epoch 79/100
Epoch 80/100
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Epoch 82/100
Epoch 83/100
Epoch 84/100
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Epoch 86/100
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Epoch 89/100
Epoch 90/100
Epoch 91/100
Epoch 92/100
Epoch 93/100
Epoch 94/100
Epoch 95/100
Epoch 96/100
Epoch 97/100
Epoch 98/100
Epoch 99/100
Epoch 100/100
/usr/local/lib/python3.10/dist-packages/keras/engine/training_v1.py:2357: UserWarning: `Model.state_updates` will be removed in a future version. This property should not be used in TensorFlow 2.0, as `updates` are applied automatically.
  updates=self.state_updates,
2023-01-28 16:36:29.558590: W tensorflow/c/c_api.cc:291] Operation '{name:'z_mean/BiasAdd' id:49 op device:{requested: '', assigned: ''} def:{{{node z_mean/BiasAdd}} = BiasAdd[T=DT_FLOAT, _has_manual_control_dependencies=true, data_format="NHWC"](z_mean/MatMul, z_mean/BiasAdd/ReadVariableOp)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
2023-01-28 16:36:30.912168: W tensorflow/c/c_api.cc:291] Operation '{name:'dense_2_1/Sigmoid' id:147 op device:{requested: '', assigned: ''} def:{{{node dense_2_1/Sigmoid}} = Sigmoid[T=DT_FLOAT, _has_manual_control_dependencies=true](dense_2_1/BiasAdd)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
Epoch 1/100
2023-01-28 16:36:51.548654: W tensorflow/c/c_api.cc:291] Operation '{name:'training_2/Adam/dense_4/bias/v/Assign' id:1228 op device:{requested: '', assigned: ''} def:{{{node training_2/Adam/dense_4/bias/v/Assign}} = AssignVariableOp[_has_manual_control_dependencies=true, dtype=DT_FLOAT, validate_shape=false](training_2/Adam/dense_4/bias/v, training_2/Adam/dense_4/bias/v/Initializer/zeros)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
Epoch 2/100
Epoch 3/100
Epoch 4/100
Epoch 5/100
Epoch 6/100
Epoch 7/100
Epoch 8/100
Epoch 9/100
Epoch 10/100
Epoch 11/100
Epoch 12/100
Epoch 13/100
Epoch 14/100
Epoch 15/100
Epoch 16/100
Epoch 17/100
Epoch 18/100
Epoch 19/100
Epoch 20/100
Epoch 21/100
Epoch 22/100
Epoch 23/100
Epoch 24/100
Epoch 25/100
Epoch 26/100
Epoch 27/100
Epoch 28/100
Epoch 29/100
Epoch 30/100
Epoch 31/100
Epoch 32/100
Epoch 33/100
Epoch 34/100
Epoch 35/100
Epoch 36/100
Epoch 37/100
Epoch 38/100
Epoch 39/100
Epoch 40/100
Epoch 41/100
Epoch 42/100
Epoch 43/100
Epoch 44/100
Epoch 45/100
Epoch 46/100
Epoch 47/100
Epoch 48/100
Epoch 49/100
Epoch 50/100
Epoch 51/100
Epoch 52/100
Epoch 53/100
Epoch 54/100
Epoch 55/100
Epoch 56/100
Epoch 57/100
Epoch 58/100
Epoch 59/100
Epoch 60/100
Epoch 61/100
Epoch 62/100
Epoch 63/100
Epoch 64/100
Epoch 65/100
Epoch 66/100
Epoch 67/100
Epoch 68/100
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Epoch 78/100
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Epoch 80/100
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Epoch 84/100
Epoch 85/100
Epoch 86/100
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Epoch 88/100
Epoch 89/100
Epoch 90/100
Epoch 91/100
Epoch 92/100
Epoch 93/100
Epoch 94/100
Epoch 95/100
Epoch 96/100
Epoch 97/100
Epoch 98/100
Epoch 99/100
Epoch 100/100
/usr/local/lib/python3.10/dist-packages/keras/engine/training_v1.py:2357: UserWarning: `Model.state_updates` will be removed in a future version. This property should not be used in TensorFlow 2.0, as `updates` are applied automatically.
  updates=self.state_updates,
2023-01-28 16:38:07.318151: W tensorflow/c/c_api.cc:291] Operation '{name:'z_mean_1/BiasAdd' id:718 op device:{requested: '', assigned: ''} def:{{{node z_mean_1/BiasAdd}} = BiasAdd[T=DT_FLOAT, _has_manual_control_dependencies=true, data_format="NHWC"](z_mean_1/MatMul, z_mean_1/BiasAdd/ReadVariableOp)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
2023-01-28 16:38:08.107341: W tensorflow/c/c_api.cc:291] Operation '{name:'dense_5_1/Sigmoid' id:818 op device:{requested: '', assigned: ''} def:{{{node dense_5_1/Sigmoid}} = Sigmoid[T=DT_FLOAT, _has_manual_control_dependencies=true](dense_5_1/BiasAdd)}}' was changed by setting attribute after it was run by a session. This mutation will have no effect, and will trigger an error in the future. Either don't modify nodes after running them or create a new session.
Killed