| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-01-29 16:33:37 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biomvRCNS package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biomvRCNS.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 192/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biomvRCNS 1.39.0 (landing page) Yang Du
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: biomvRCNS |
| Version: 1.39.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data biomvRCNS |
| StartedAt: 2023-01-28 06:01:04 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 06:01:05 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 1.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data biomvRCNS
###
##############################################################################
##############################################################################
* checking for file ‘biomvRCNS/DESCRIPTION’ ... OK
* preparing ‘biomvRCNS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘biomvRCNS’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gcc -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -c biomvRCNS.c -o biomvRCNS.o
biomvRCNS.c: In function ‘forward’:
biomvRCNS.c:153:43: error: ‘DOUBLE_XMIN’ undeclared (first use in this function); did you mean ‘DBL_MIN’?
153 | m_e(F, t, j, T)+= DOUBLE_XMIN;
| ^~~~~~~~~~~
| DBL_MIN
biomvRCNS.c:153:43: note: each undeclared identifier is reported only once for each function it appears in
biomvRCNS.c: In function ‘viterbi’:
biomvRCNS.c:294:36: error: ‘DOUBLE_XMAX’ undeclared (first use in this function); did you mean ‘DBL_MAX’?
294 | double obs, prod, maxprod=-DOUBLE_XMAX;
| ^~~~~~~~~~~
| DBL_MAX
biomvRCNS.c: In function ‘logviterbi’:
biomvRCNS.c:401:36: error: ‘DOUBLE_XMAX’ undeclared (first use in this function); did you mean ‘DBL_MAX’?
401 | double obs, prod, maxprod=-DOUBLE_XMAX;
| ^~~~~~~~~~~
| DBL_MAX
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:191: biomvRCNS.o] Error 1
ERROR: compilation failed for package ‘biomvRCNS’
* removing ‘/tmp/Rtmph6r3dB/Rinstdc784eabb84f/biomvRCNS’
-----------------------------------
ERROR: package installation failed