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This page was generated on 2023-01-29 16:33:47 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for fgsea on kunpeng1


To the developers/maintainers of the fgsea package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fgsea.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 666/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fgsea 1.25.0  (landing page)
Alexey Sergushichev
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/fgsea
git_branch: master
git_last_commit: cde14b7
git_last_commit_date: 2022-11-01 15:13:59 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: fgsea
Version: 1.25.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
StartedAt: 2023-01-28 08:34:42 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 08:38:48 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 245.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data fgsea
###
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* checking for file ‘fgsea/DESCRIPTION’ ... OK
* preparing ‘fgsea’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘fgsea-tutorial.Rmd’ using rmarkdown
Failed with error:  'there is no package called 'reactome.db''
Quitting from lines 124-127 (fgsea-tutorial.Rmd) 
Error: processing vignette 'fgsea-tutorial.Rmd' failed with diagnostics:
requireNamespace("reactome.db") is not TRUE
--- failed re-building ‘fgsea-tutorial.Rmd’

--- re-building ‘geseca-tutorial.Rmd’ using rmarkdown
Quitting from lines 87-109 (geseca-tutorial.Rmd) 
Error: processing vignette 'geseca-tutorial.Rmd' failed with diagnostics:
Timeout was reached: [] Operation timed out after 120000 milliseconds with 10403840 out of 19178962 bytes received
--- failed re-building ‘geseca-tutorial.Rmd’

SUMMARY: processing the following files failed:
  ‘fgsea-tutorial.Rmd’ ‘geseca-tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted