| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:33:50 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ggbio package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ggbio.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 798/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ggbio 1.47.0 (landing page) Michael Lawrence
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: ggbio |
| Version: 1.47.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio |
| StartedAt: 2023-01-28 09:07:18 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 09:10:39 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 200.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio
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* checking for file ‘ggbio/DESCRIPTION’ ... OK
* preparing ‘ggbio’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘ggbio.Rnw’ using Sweave
--- finished re-building ‘ggbio.Rnw’
cp realvignettes/*.Rnw .
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript -e "library(knitr); knit2pdf('ggbio.Rnw')"
processing file: ggbio.Rnw
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|.............. | 30% (unnamed-chunk-16) Quitting from lines 288-299 (ggbio.Rnw)
Error in library(BSgenome.Hsapiens.UCSC.hg19) :
there is no package called 'BSgenome.Hsapiens.UCSC.hg19'
Calls: knit2pdf ... withVisible -> eval_with_user_handlers -> eval -> eval -> library
Execution halted
make: *** [Makefile:15: ggbio.pdf] Error 1
Error in tools::buildVignettes(dir = ".", tangle = TRUE) :
running 'make' failed
Execution halted