Back to Build/check report for BioC 3.17
ABCDEFGHIJKLMN[O]PQRSTUVWXYZ

This page was generated on 2023-01-29 16:34:03 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for onlineFDR on kunpeng1


To the developers/maintainers of the onlineFDR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/onlineFDR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1387/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
onlineFDR 2.7.0  (landing page)
David S. Robertson
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/onlineFDR
git_branch: master
git_last_commit: 71d3c89
git_last_commit_date: 2022-11-01 15:17:59 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: onlineFDR
Version: 2.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL onlineFDR
StartedAt: 2023-01-27 23:31:20 -0000 (Fri, 27 Jan 2023)
EndedAt: 2023-01-27 23:34:02 -0000 (Fri, 27 Jan 2023)
EllapsedTime: 161.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL onlineFDR
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’
* installing *source* package ‘onlineFDR’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c addis.cpp -o addis.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c addis_spending.cpp -o addis_spending.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c alphainvesting.cpp -o alphainvesting.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c lond.cpp -o lond.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c londstar.cpp -o londstar.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c lord.cpp -o lord.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c lordstar.cpp -o lordstar.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c online_fallback.cpp -o online_fallback.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c saffron.cpp -o saffron.o
g++ -std=gnu++14  -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include    -fPIC  -g -O2  -Wall  -c saffronstar.cpp -o saffronstar.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o onlineFDR.so RcppExports.o addis.o addis_spending.o alphainvesting.o lond.o londstar.o lord.o lordstar.o online_fallback.o saffron.o saffronstar.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-onlineFDR/00new/onlineFDR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpMdQvCn/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** help
*** installing help indices
*** copying figures
** building package indices
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpZOIXP6/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** installing vignettes
** testing if installed package can be loaded from temporary location
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
Error installing renv:
======================
* installing *source* package ‘renv’ ...
** package ‘renv’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’
* removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’
Warning messages:
1: In system2(r, args, stdout = TRUE, stderr = TRUE) :
  running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpaOwjLw/renv_0.15.5.tar.gz' 2>&1' had status 1
2: Failed to find an renv installation: the project will not be loaded.
Use `renv::activate()` to re-initialize the project. 
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
# Bootstrapping renv 0.15.5 --------------------------------------------------
* Downloading renv 0.15.5 ... OK
* Installing renv 0.15.5 ... Done!
* Successfully installed and loaded renv 0.15.5.
ℹ Using R 4.3.0 (lockfile was generated with R 4.2.0)
Retrieving 'https://cran.rstudio.com/src/contrib/BiocManager_1.30.19.tar.gz' ...
	OK [downloaded 258 Kb in 0.6 secs]
Installing BiocManager [1.30.19] ...
	OK [built from source]
Moving BiocManager [1.30.19] into the cache ...
	OK [moved to cache in 0.62 milliseconds]
Warning message:
This project is configured to use Bioconductor '3.16', which is not compatible with R '4.3.0'.
Use 'renv::init(bioconductor = TRUE)' to re-initialize this project with the latest Bioconductor release. 
** testing if installed package keeps a record of temporary installation path
* DONE (onlineFDR)