Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:34:03 -0000 (Sun, 29 Jan 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the onlineFDR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/onlineFDR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 1387/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
onlineFDR 2.7.0 (landing page) David S. Robertson
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
Package: onlineFDR |
Version: 2.7.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL onlineFDR |
StartedAt: 2023-01-27 23:31:20 -0000 (Fri, 27 Jan 2023) |
EndedAt: 2023-01-27 23:34:02 -0000 (Fri, 27 Jan 2023) |
EllapsedTime: 161.9 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL onlineFDR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/site-library’ * installing *source* package ‘onlineFDR’ ... ** using staged installation ** libs using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’ g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c addis.cpp -o addis.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c addis_spending.cpp -o addis_spending.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c alphainvesting.cpp -o alphainvesting.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c lond.cpp -o lond.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c londstar.cpp -o londstar.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c lord.cpp -o lord.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c lordstar.cpp -o lordstar.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c online_fallback.cpp -o online_fallback.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c saffron.cpp -o saffron.o g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/site-library/RcppProgress/include' -I/usr/local/include -fPIC -g -O2 -Wall -c saffronstar.cpp -o saffronstar.o g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o onlineFDR.so RcppExports.o addis.o addis_spending.o alphainvesting.o lond.o londstar.o lord.o lordstar.o online_fallback.o saffron.o saffronstar.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.17-bioc/R/site-library/00LOCK-onlineFDR/00new/onlineFDR/libs ** R ** inst ** byte-compile and prepare package for lazy loading # Bootstrapping renv 0.15.5 -------------------------------------------------- * Downloading renv 0.15.5 ... OK * Installing renv 0.15.5 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpMdQvCn/renv_0.15.5.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** help *** installing help indices *** copying figures ** building package indices # Bootstrapping renv 0.15.5 -------------------------------------------------- * Downloading renv 0.15.5 ... OK * Installing renv 0.15.5 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpZOIXP6/renv_0.15.5.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** installing vignettes ** testing if installed package can be loaded from temporary location # Bootstrapping renv 0.15.5 -------------------------------------------------- * Downloading renv 0.15.5 ... OK * Installing renv 0.15.5 ... Done! Error installing renv: ====================== * installing *source* package ‘renv’ ... ** package ‘renv’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path ERROR: hard-coded installation path: please report to the package maintainer and use ‘--no-staged-install’ * removing ‘/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu/renv’ Warning messages: 1: In system2(r, args, stdout = TRUE, stderr = TRUE) : running command ''/home/biocbuild/bbs-3.17-bioc/R/bin/R' --vanilla CMD INSTALL --no-multiarch -l '/home/biocbuild/.cache/R/renv/library/onlineFDR-33e5937d/R-4.3-r83615/aarch64-unknown-linux-gnu' '/tmp/RtmpaOwjLw/renv_0.15.5.tar.gz' 2>&1' had status 1 2: Failed to find an renv installation: the project will not be loaded. Use `renv::activate()` to re-initialize the project. ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location # Bootstrapping renv 0.15.5 -------------------------------------------------- * Downloading renv 0.15.5 ... OK * Installing renv 0.15.5 ... Done! * Successfully installed and loaded renv 0.15.5. ℹ Using R 4.3.0 (lockfile was generated with R 4.2.0) Retrieving 'https://cran.rstudio.com/src/contrib/BiocManager_1.30.19.tar.gz' ... OK [downloaded 258 Kb in 0.6 secs] Installing BiocManager [1.30.19] ... OK [built from source] Moving BiocManager [1.30.19] into the cache ... OK [moved to cache in 0.62 milliseconds] Warning message: This project is configured to use Bioconductor '3.16', which is not compatible with R '4.3.0'. Use 'renv::init(bioconductor = TRUE)' to re-initialize this project with the latest Bioconductor release. ** testing if installed package keeps a record of temporary installation path * DONE (onlineFDR)