| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:34:06 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the pqsfinder package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/pqsfinder.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1499/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| pqsfinder 2.15.1 (landing page) Jiri Hon
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: pqsfinder |
| Version: 2.15.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder |
| StartedAt: 2023-01-28 12:48:10 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 12:49:48 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 98.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data pqsfinder ### ############################################################################## ############################################################################## * checking for file ‘pqsfinder/DESCRIPTION’ ... OK * preparing ‘pqsfinder’: * checking DESCRIPTION meta-information ... OK * cleaning src * running ‘cleanup’ * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘pqsfinder.Rmd’ using rmarkdown Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished The magick package is required to crop "/tmp/RtmpIxMaZn/Rbuild1abf303309a797/pqsfinder/vignettes/pqsfinder_files/figure-html/density_viz-1.png" but not available. Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Searching on sense strand... Search status: finished Searching on antisense strand... Search status: finished Quitting from lines 178-183 (pqsfinder.Rmd) Error: processing vignette 'pqsfinder.Rmd' failed with diagnostics: there is no package called 'BSgenome.Hsapiens.UCSC.hg38' --- failed re-building ‘pqsfinder.Rmd’ SUMMARY: processing the following file failed: ‘pqsfinder.Rmd’ Error: Vignette re-building failed. Execution halted