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This page was generated on 2023-01-29 16:34:10 -0000 (Sun, 29 Jan 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4021
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BUILD results for rGADEM on kunpeng1


To the developers/maintainers of the rGADEM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rGADEM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 1646/2162HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rGADEM 2.47.0  (landing page)
Arnaud Droit
Snapshot Date: 2023-01-27 13:09:27 -0000 (Fri, 27 Jan 2023)
git_url: https://git.bioconductor.org/packages/rGADEM
git_branch: master
git_last_commit: d3e9d1d
git_last_commit_date: 2022-11-01 15:04:51 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: rGADEM
Version: 2.47.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rGADEM
StartedAt: 2023-01-28 13:36:09 -0000 (Sat, 28 Jan 2023)
EndedAt: 2023-01-28 13:37:12 -0000 (Sat, 28 Jan 2023)
EllapsedTime: 63.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rGADEM
###
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* checking for file ‘rGADEM/DESCRIPTION’ ... OK
* preparing ‘rGADEM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rGADEM.Rnw’ using Sweave
Loading required package: Biostrings
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: XVector
Loading required package: GenomeInfoDb

Attaching package: ‘Biostrings’

The following object is masked from ‘package:base’:

    strsplit

Loading required package: BSgenome
Loading required package: GenomicRanges
Loading required package: rtracklayer
Loading required package: seqLogo
Loading required package: grid

Attaching package: ‘grid’

The following object is masked from ‘package:Biostrings’:

    pattern


Attaching package: ‘rGADEM’

The following object is masked from ‘package:seqLogo’:

    consensus


Error: processing vignette 'rGADEM.Rnw' failed with diagnostics:
 chunk 2 (label = loading BSgenome package) 
Error in library(BSgenome.Hsapiens.UCSC.hg19) : 
  there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’

--- failed re-building ‘rGADEM.Rnw’

SUMMARY: processing the following file failed:
  ‘rGADEM.Rnw’

Error: Vignette re-building failed.
Execution halted