| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:34:12 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the rTRM package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rTRM.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1735/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| rTRM 1.37.0 (landing page) Diego Diez
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: rTRM |
| Version: 1.37.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM |
| StartedAt: 2023-01-28 14:14:07 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 14:14:48 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 41.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rTRM
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* checking for file ‘rTRM/DESCRIPTION’ ... OK
* preparing ‘rTRM’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
Loading required package: igraph
Attaching package: ‘igraph’
The following objects are masked from ‘package:stats’:
decompose, spectrum
The following object is masked from ‘package:base’:
union
* building the PDF package manual
* creating vignettes ... ERROR
--- re-building ‘Introduction.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmptRiiFG/Rbuild1c5373178b2f58/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmptRiiFG/Rbuild1c5373178b2f58/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-2-2.png" but not available.
Read 8734 items
The magick package is required to crop "/tmp/RtmptRiiFG/Rbuild1c5373178b2f58/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/tmp/RtmptRiiFG/Rbuild1c5373178b2f58/rTRM/vignettes/Introduction_files/figure-html/unnamed-chunk-16-2.png" but not available.
Quitting from lines 265-274 (Introduction.Rmd)
Error: processing vignette 'Introduction.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Mmusculus.UCSC.mm8.masked'
--- failed re-building ‘Introduction.Rmd’
SUMMARY: processing the following file failed:
‘Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted