| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-01-29 16:34:15 -0000 (Sun, 29 Jan 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4021 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the slingshot package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/slingshot.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1884/2162 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| slingshot 2.7.0 (landing page) Kelly Street
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: slingshot |
| Version: 2.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data slingshot |
| StartedAt: 2023-01-28 15:16:23 -0000 (Sat, 28 Jan 2023) |
| EndedAt: 2023-01-28 15:17:23 -0000 (Sat, 28 Jan 2023) |
| EllapsedTime: 60.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data slingshot ### ############################################################################## ############################################################################## * checking for file ‘slingshot/DESCRIPTION’ ... OK * preparing ‘slingshot’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘conditionsVignette.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-1-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-3-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-4-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-5-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-7-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-11-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-16-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/conditionsVignette_files/figure-html/unnamed-chunk-18-1.png" but not available. --- finished re-building ‘conditionsVignette.Rmd’ --- re-building ‘vignette.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/vignette_files/figure-html/pca-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/vignette_files/figure-html/umap-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/vignette_files/figure-html/clustering_mclust-1.png" but not available. The magick package is required to crop "/tmp/RtmpHQv9aA/Rbuild1ce70976b47d16/slingshot/vignettes/vignette_files/figure-html/clustering-1.png" but not available. Quitting from lines 276-277 (vignette.Rmd) Error: processing vignette 'vignette.Rmd' failed with diagnostics: At core/paths/dijkstra.c:360 : Weight vector must not contain NaN values, Invalid value --- failed re-building ‘vignette.Rmd’ SUMMARY: processing the following file failed: ‘vignette.Rmd’ Error: Vignette re-building failed. Execution halted