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This page was generated on 2023-02-03 02:36:01 -0000 (Fri, 03 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4039
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BUILD results for GUIDEseq on kunpeng1


To the developers/maintainers of the GUIDEseq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GUIDEseq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 867/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GUIDEseq 1.29.4  (landing page)
Lihua Julie Zhu
Snapshot Date: 2023-02-01 03:13:00 -0000 (Wed, 01 Feb 2023)
git_url: https://git.bioconductor.org/packages/GUIDEseq
git_branch: master
git_last_commit: a1608c6
git_last_commit_date: 2022-11-22 04:35:38 -0000 (Tue, 22 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: GUIDEseq
Version: 1.29.4
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GUIDEseq
StartedAt: 2023-02-01 17:00:18 -0000 (Wed, 01 Feb 2023)
EndedAt: 2023-02-01 17:02:07 -0000 (Wed, 01 Feb 2023)
EllapsedTime: 109.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GUIDEseq
###
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* checking for file ‘GUIDEseq/DESCRIPTION’ ... OK
* preparing ‘GUIDEseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GUIDEseq.Rnw’ using Sweave
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
computing coverage for plus strand ...
computing coverage for minus strand ...
call peaks ...
finding local max for chromosome: chr13

Error: processing vignette 'GUIDEseq.Rnw' failed with diagnostics:
 chunk 7 
Error in library(BSgenome.Hsapiens.UCSC.hg19) : 
  there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’

--- failed re-building ‘GUIDEseq.Rnw’

SUMMARY: processing the following file failed:
  ‘GUIDEseq.Rnw’

Error: Vignette re-building failed.
Execution halted