| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-03 02:36:02 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 914/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
| StartedAt: 2023-02-02 09:59:35 -0000 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 10:17:08 -0000 (Thu, 02 Feb 2023) |
| EllapsedTime: 1053.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 39.809 0.395 40.924
corr_plot 38.342 0.303 40.340
FSmethod 37.033 0.360 38.347
pred_ensembel 18.368 0.208 19.032
getFASTA 0.886 0.004 8.696
enrichfindP 0.427 0.016 15.100
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 100.640084
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 99.146552
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 101.917484
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.167333
final value 94.466823
converged
Fitting Repeat 5
# weights: 103
initial value 108.444920
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.164832
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 123.391158
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.840247
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 94.756308
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 111.237742
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 128.046586
final value 94.466823
converged
Fitting Repeat 2
# weights: 507
initial value 109.623983
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 97.744049
final value 94.466823
converged
Fitting Repeat 4
# weights: 507
initial value 103.642888
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 102.047967
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 96.915608
iter 10 value 94.490672
iter 20 value 94.436162
iter 30 value 91.872562
iter 40 value 89.257991
iter 50 value 86.843028
iter 60 value 84.974974
iter 70 value 84.766150
iter 80 value 84.659741
iter 90 value 84.276673
iter 100 value 83.913796
final value 83.913796
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 102.144031
iter 10 value 94.526318
iter 20 value 94.477104
iter 30 value 94.222327
iter 40 value 94.100642
iter 50 value 93.395491
iter 60 value 84.912166
iter 70 value 84.540592
iter 80 value 84.224074
iter 90 value 82.495046
iter 100 value 82.258900
final value 82.258900
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 103.411982
iter 10 value 96.347191
iter 20 value 94.488900
iter 30 value 94.414342
iter 40 value 91.416572
iter 50 value 86.885989
iter 60 value 84.130504
iter 70 value 82.587190
iter 80 value 82.353167
iter 90 value 81.922612
final value 81.904357
converged
Fitting Repeat 4
# weights: 103
initial value 99.763009
iter 10 value 94.475621
iter 20 value 94.015252
iter 30 value 93.140405
iter 40 value 91.407811
iter 50 value 91.070613
iter 60 value 85.584994
iter 70 value 85.174079
iter 80 value 82.606715
iter 90 value 82.265977
iter 100 value 82.079931
final value 82.079931
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 96.905256
iter 10 value 94.374337
iter 20 value 91.018895
iter 30 value 83.122013
iter 40 value 82.732359
iter 50 value 82.254218
iter 60 value 81.908193
final value 81.904357
converged
Fitting Repeat 1
# weights: 305
initial value 115.528626
iter 10 value 94.475386
iter 20 value 92.262535
iter 30 value 87.885706
iter 40 value 83.112907
iter 50 value 81.474399
iter 60 value 81.191406
iter 70 value 81.178125
iter 80 value 80.911721
iter 90 value 80.768941
iter 100 value 80.684356
final value 80.684356
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.020902
iter 10 value 94.518082
iter 20 value 91.576156
iter 30 value 84.155735
iter 40 value 82.081420
iter 50 value 81.953972
iter 60 value 81.930469
iter 70 value 81.825717
iter 80 value 81.669332
iter 90 value 81.565814
iter 100 value 80.865520
final value 80.865520
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.937915
iter 10 value 94.559781
iter 20 value 94.472359
iter 30 value 94.297215
iter 40 value 93.393653
iter 50 value 87.438054
iter 60 value 82.362817
iter 70 value 82.107259
iter 80 value 81.374291
iter 90 value 81.118630
iter 100 value 81.048093
final value 81.048093
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.298992
iter 10 value 94.672004
iter 20 value 91.647288
iter 30 value 88.753665
iter 40 value 85.303700
iter 50 value 83.995837
iter 60 value 83.013656
iter 70 value 82.581035
iter 80 value 82.261361
iter 90 value 82.097456
iter 100 value 81.991233
final value 81.991233
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 111.491916
iter 10 value 94.671462
iter 20 value 93.135937
iter 30 value 90.797773
iter 40 value 85.185572
iter 50 value 84.594549
iter 60 value 84.104296
iter 70 value 84.007501
iter 80 value 83.842732
iter 90 value 82.493241
iter 100 value 81.638511
final value 81.638511
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.941446
iter 10 value 94.556966
iter 20 value 92.928783
iter 30 value 87.364272
iter 40 value 84.680849
iter 50 value 83.859145
iter 60 value 83.118500
iter 70 value 82.626020
iter 80 value 82.497183
iter 90 value 82.299108
iter 100 value 81.764705
final value 81.764705
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.709915
iter 10 value 94.393429
iter 20 value 93.214723
iter 30 value 85.871044
iter 40 value 83.115075
iter 50 value 82.401337
iter 60 value 81.356600
iter 70 value 81.274022
iter 80 value 81.145392
iter 90 value 81.110913
iter 100 value 80.905651
final value 80.905651
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 104.325081
iter 10 value 94.254499
iter 20 value 85.083706
iter 30 value 84.596275
iter 40 value 83.873882
iter 50 value 81.944717
iter 60 value 81.664275
iter 70 value 81.031941
iter 80 value 80.632069
iter 90 value 80.364592
iter 100 value 80.242955
final value 80.242955
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 107.701579
iter 10 value 96.353665
iter 20 value 87.137130
iter 30 value 84.591653
iter 40 value 84.194205
iter 50 value 84.176876
iter 60 value 84.140899
iter 70 value 84.045360
iter 80 value 84.007717
iter 90 value 83.969764
iter 100 value 83.868679
final value 83.868679
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 128.774934
iter 10 value 94.726328
iter 20 value 94.052243
iter 30 value 86.893034
iter 40 value 85.598835
iter 50 value 84.245968
iter 60 value 81.984784
iter 70 value 80.710677
iter 80 value 80.547600
iter 90 value 79.871918
iter 100 value 79.763033
final value 79.763033
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.915120
final value 94.485989
converged
Fitting Repeat 2
# weights: 103
initial value 95.528989
final value 94.485725
converged
Fitting Repeat 3
# weights: 103
initial value 96.512913
final value 94.486006
converged
Fitting Repeat 4
# weights: 103
initial value 99.341765
final value 94.468257
converged
Fitting Repeat 5
# weights: 103
initial value 101.113180
iter 10 value 94.468605
iter 20 value 92.023168
final value 87.334502
converged
Fitting Repeat 1
# weights: 305
initial value 104.687563
iter 10 value 94.489113
iter 20 value 94.484360
iter 30 value 89.271917
iter 40 value 82.904401
iter 50 value 81.862037
iter 60 value 81.679351
iter 70 value 81.668228
iter 80 value 81.668116
final value 81.668096
converged
Fitting Repeat 2
# weights: 305
initial value 101.764507
iter 10 value 94.489300
iter 20 value 92.287714
iter 30 value 85.790013
iter 40 value 84.029341
iter 50 value 82.263172
iter 60 value 81.337653
iter 70 value 81.304205
iter 80 value 81.303300
iter 90 value 81.169008
iter 100 value 81.032758
final value 81.032758
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 96.622207
iter 10 value 94.446302
iter 20 value 94.442608
iter 30 value 88.510735
iter 40 value 85.313706
iter 50 value 85.313269
iter 60 value 85.312504
iter 70 value 84.693695
iter 80 value 83.461055
iter 90 value 81.858914
iter 100 value 79.283630
final value 79.283630
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 125.755268
iter 10 value 94.472103
iter 20 value 93.752918
iter 30 value 85.532221
iter 40 value 85.519900
iter 50 value 84.881557
iter 60 value 84.214248
iter 70 value 84.210476
iter 80 value 84.208894
iter 90 value 84.206964
final value 84.206474
converged
Fitting Repeat 5
# weights: 305
initial value 98.844894
iter 10 value 94.425553
iter 20 value 94.304298
iter 30 value 94.212345
iter 40 value 92.744453
iter 50 value 91.080235
iter 60 value 90.659659
iter 70 value 90.657343
iter 80 value 89.939804
iter 80 value 89.939803
iter 80 value 89.939803
final value 89.939803
converged
Fitting Repeat 1
# weights: 507
initial value 97.003460
iter 10 value 94.319849
iter 20 value 94.310589
iter 30 value 92.635060
iter 40 value 92.421799
iter 50 value 92.421760
final value 92.421754
converged
Fitting Repeat 2
# weights: 507
initial value 103.495666
iter 10 value 93.438919
iter 20 value 93.433563
iter 30 value 93.425685
iter 40 value 93.087183
iter 50 value 90.905798
iter 60 value 85.619977
iter 70 value 84.330584
final value 84.328004
converged
Fitting Repeat 3
# weights: 507
initial value 99.587430
iter 10 value 94.492488
iter 20 value 94.455565
iter 30 value 87.113632
iter 40 value 84.133396
iter 50 value 84.050186
final value 84.049925
converged
Fitting Repeat 4
# weights: 507
initial value 98.648467
iter 10 value 94.474840
iter 20 value 94.318417
iter 30 value 93.426583
iter 40 value 93.423871
final value 93.423845
converged
Fitting Repeat 5
# weights: 507
initial value 107.764173
iter 10 value 92.189380
iter 20 value 90.797342
iter 30 value 90.790083
iter 40 value 84.245106
iter 50 value 84.183041
iter 60 value 83.877987
iter 70 value 82.266922
iter 80 value 81.440694
iter 90 value 81.011018
iter 100 value 80.826494
final value 80.826494
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 102.106648
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 95.565641
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 99.948769
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 108.333480
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.820642
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 92.812273
iter 10 value 89.579997
final value 89.579595
converged
Fitting Repeat 2
# weights: 305
initial value 94.866612
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.184231
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 102.096940
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 102.166627
iter 10 value 93.808227
iter 20 value 93.778232
final value 93.778228
converged
Fitting Repeat 1
# weights: 507
initial value 102.725342
iter 10 value 86.297073
iter 20 value 85.837464
final value 85.837406
converged
Fitting Repeat 2
# weights: 507
initial value 106.284486
final value 94.052910
converged
Fitting Repeat 3
# weights: 507
initial value 106.334034
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 94.185753
iter 10 value 84.536920
iter 20 value 84.116833
iter 30 value 83.890407
iter 40 value 83.514423
iter 40 value 83.514423
final value 83.514423
converged
Fitting Repeat 5
# weights: 507
initial value 113.241637
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 112.475268
iter 10 value 97.511738
iter 20 value 94.056775
iter 30 value 94.018784
iter 40 value 93.127233
iter 50 value 93.062809
iter 60 value 90.527731
iter 70 value 87.502705
iter 80 value 87.201244
iter 90 value 86.467351
iter 100 value 85.144678
final value 85.144678
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 104.053408
iter 10 value 93.985922
iter 20 value 85.827725
iter 30 value 84.423869
iter 40 value 84.402334
iter 50 value 84.306792
iter 60 value 84.191624
final value 84.183500
converged
Fitting Repeat 3
# weights: 103
initial value 100.482012
iter 10 value 94.065597
iter 20 value 94.054358
iter 30 value 93.363295
iter 40 value 92.203587
iter 50 value 88.173827
iter 60 value 87.574599
iter 70 value 85.907867
iter 80 value 84.917086
iter 90 value 84.755265
iter 100 value 84.176099
final value 84.176099
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 95.697214
iter 10 value 94.063710
iter 20 value 94.000797
iter 30 value 93.298249
iter 40 value 93.192955
iter 50 value 92.298899
iter 60 value 85.988951
iter 70 value 84.739090
iter 80 value 83.764725
iter 90 value 83.372199
iter 100 value 82.947387
final value 82.947387
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 110.638061
iter 10 value 93.903389
iter 20 value 91.346537
iter 30 value 86.788847
iter 40 value 84.587166
iter 50 value 84.521845
iter 60 value 84.128688
iter 70 value 84.052344
iter 80 value 83.935258
iter 90 value 83.921228
iter 90 value 83.921228
iter 90 value 83.921228
final value 83.921228
converged
Fitting Repeat 1
# weights: 305
initial value 103.130600
iter 10 value 93.848931
iter 20 value 89.953649
iter 30 value 86.034083
iter 40 value 83.997491
iter 50 value 83.481014
iter 60 value 83.089913
iter 70 value 82.980337
iter 80 value 82.841821
iter 90 value 82.536097
iter 100 value 82.183555
final value 82.183555
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.495063
iter 10 value 94.069207
iter 20 value 91.493250
iter 30 value 89.041355
iter 40 value 88.465360
iter 50 value 87.311547
iter 60 value 84.916133
iter 70 value 83.995782
iter 80 value 83.587048
iter 90 value 82.409291
iter 100 value 82.053943
final value 82.053943
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 108.684236
iter 10 value 90.993211
iter 20 value 88.609214
iter 30 value 84.836820
iter 40 value 84.416370
iter 50 value 83.192755
iter 60 value 82.449785
iter 70 value 82.309919
iter 80 value 82.254828
iter 90 value 82.208954
iter 100 value 82.201984
final value 82.201984
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 110.835766
iter 10 value 94.038019
iter 20 value 92.984839
iter 30 value 88.998799
iter 40 value 88.540246
iter 50 value 85.914964
iter 60 value 83.142799
iter 70 value 82.266685
iter 80 value 82.026826
iter 90 value 81.770424
iter 100 value 81.641724
final value 81.641724
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 112.171854
iter 10 value 94.064788
iter 20 value 93.547213
iter 30 value 92.704145
iter 40 value 89.724431
iter 50 value 86.820864
iter 60 value 85.826932
iter 70 value 85.317975
iter 80 value 84.046439
iter 90 value 83.663726
iter 100 value 82.546642
final value 82.546642
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 122.033258
iter 10 value 98.952158
iter 20 value 86.274135
iter 30 value 85.146753
iter 40 value 84.513501
iter 50 value 83.809137
iter 60 value 82.517155
iter 70 value 82.032232
iter 80 value 81.973026
iter 90 value 81.805338
iter 100 value 81.743594
final value 81.743594
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 112.197756
iter 10 value 94.200034
iter 20 value 93.271787
iter 30 value 89.058716
iter 40 value 87.915351
iter 50 value 85.772708
iter 60 value 84.634812
iter 70 value 83.559688
iter 80 value 82.671330
iter 90 value 82.195481
iter 100 value 81.814210
final value 81.814210
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.720228
iter 10 value 96.050526
iter 20 value 92.550934
iter 30 value 92.109334
iter 40 value 90.704770
iter 50 value 88.851974
iter 60 value 85.136498
iter 70 value 84.538779
iter 80 value 84.351593
iter 90 value 84.278659
iter 100 value 83.920401
final value 83.920401
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 113.223223
iter 10 value 94.504139
iter 20 value 93.799587
iter 30 value 88.350075
iter 40 value 87.026368
iter 50 value 84.482391
iter 60 value 84.133133
iter 70 value 83.894468
iter 80 value 83.120901
iter 90 value 82.617666
iter 100 value 82.256368
final value 82.256368
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.375870
iter 10 value 94.067498
iter 20 value 93.841563
iter 30 value 93.762589
iter 40 value 91.781826
iter 50 value 84.816495
iter 60 value 84.039274
iter 70 value 83.370784
iter 80 value 83.069471
iter 90 value 82.976724
iter 100 value 82.947351
final value 82.947351
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.597403
final value 94.054581
converged
Fitting Repeat 2
# weights: 103
initial value 96.567841
final value 94.054470
converged
Fitting Repeat 3
# weights: 103
initial value 98.989799
final value 93.373652
converged
Fitting Repeat 4
# weights: 103
initial value 96.914733
iter 10 value 94.054794
iter 20 value 93.619902
iter 30 value 93.193065
final value 93.192707
converged
Fitting Repeat 5
# weights: 103
initial value 107.419994
final value 94.054518
converged
Fitting Repeat 1
# weights: 305
initial value 95.084813
iter 10 value 94.037735
iter 20 value 93.519600
iter 30 value 93.083394
iter 40 value 87.205293
iter 50 value 86.206352
iter 60 value 86.167166
iter 70 value 86.146796
iter 80 value 86.142753
iter 90 value 86.142658
iter 100 value 86.142548
final value 86.142548
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 94.084977
iter 10 value 94.056837
iter 20 value 93.764484
final value 93.666805
converged
Fitting Repeat 3
# weights: 305
initial value 128.220853
iter 10 value 94.057589
iter 20 value 91.585825
iter 30 value 88.002692
iter 40 value 86.869644
iter 50 value 86.378742
iter 60 value 85.746436
iter 70 value 83.863159
iter 80 value 83.637744
iter 90 value 83.635451
iter 100 value 83.366718
final value 83.366718
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.603403
iter 10 value 94.057734
iter 20 value 94.030207
iter 30 value 93.192793
final value 93.192705
converged
Fitting Repeat 5
# weights: 305
initial value 112.462250
iter 10 value 93.376693
iter 20 value 93.372257
iter 30 value 86.700105
final value 85.978067
converged
Fitting Repeat 1
# weights: 507
initial value 108.427878
iter 10 value 94.042328
iter 20 value 93.978243
iter 30 value 93.379967
iter 40 value 91.690395
iter 50 value 85.180736
iter 60 value 83.928812
iter 70 value 83.922413
iter 80 value 83.829976
iter 90 value 83.007102
iter 100 value 82.912948
final value 82.912948
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 115.967724
iter 10 value 94.041895
iter 20 value 93.725678
iter 30 value 92.882334
iter 40 value 92.882080
final value 92.881844
converged
Fitting Repeat 3
# weights: 507
initial value 109.851562
iter 10 value 94.061131
iter 20 value 93.368830
iter 30 value 93.040627
final value 93.040405
converged
Fitting Repeat 4
# weights: 507
initial value 108.464635
iter 10 value 94.061444
iter 20 value 94.052531
iter 30 value 93.214832
iter 40 value 93.056950
iter 50 value 87.420438
iter 60 value 85.828445
iter 70 value 85.094659
iter 80 value 83.135442
iter 90 value 83.060806
iter 100 value 83.046122
final value 83.046122
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 104.523023
iter 10 value 93.729130
iter 20 value 93.381202
iter 30 value 87.993087
iter 40 value 86.644098
iter 50 value 86.642619
iter 60 value 86.297987
iter 70 value 86.103377
iter 80 value 86.102189
iter 90 value 86.101726
final value 86.101272
converged
Fitting Repeat 1
# weights: 103
initial value 98.169848
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.137868
iter 10 value 93.394929
iter 10 value 93.394928
iter 10 value 93.394928
final value 93.394928
converged
Fitting Repeat 3
# weights: 103
initial value 95.257338
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 94.614192
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.616834
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 100.871668
final value 94.484211
converged
Fitting Repeat 2
# weights: 305
initial value 111.414062
iter 10 value 86.897811
final value 86.053792
converged
Fitting Repeat 3
# weights: 305
initial value 112.399077
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 97.580242
iter 10 value 88.291155
iter 20 value 85.335863
iter 30 value 84.820533
iter 40 value 84.473767
iter 50 value 84.473719
final value 84.473716
converged
Fitting Repeat 5
# weights: 305
initial value 104.869921
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 103.887583
iter 10 value 93.396347
iter 20 value 93.394942
final value 93.394928
converged
Fitting Repeat 2
# weights: 507
initial value 105.521198
final value 94.484211
converged
Fitting Repeat 3
# weights: 507
initial value 113.099015
final value 94.114232
converged
Fitting Repeat 4
# weights: 507
initial value 113.385126
final value 94.473118
converged
Fitting Repeat 5
# weights: 507
initial value 106.060662
iter 10 value 93.081436
final value 93.081395
converged
Fitting Repeat 1
# weights: 103
initial value 98.716944
iter 10 value 94.488754
iter 20 value 92.491110
iter 30 value 91.863888
iter 40 value 89.524171
iter 50 value 86.240018
iter 60 value 85.264233
iter 70 value 84.256235
iter 80 value 83.274873
iter 90 value 82.788369
iter 100 value 82.065238
final value 82.065238
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 101.818951
iter 10 value 94.241336
iter 20 value 92.055622
iter 30 value 91.924721
iter 40 value 90.689563
iter 50 value 85.654551
iter 60 value 83.999898
iter 70 value 82.882196
iter 80 value 82.047797
iter 90 value 82.008159
final value 82.008097
converged
Fitting Repeat 3
# weights: 103
initial value 114.989487
iter 10 value 94.416956
iter 20 value 88.014044
iter 30 value 87.841466
iter 40 value 87.628521
iter 50 value 87.237569
iter 60 value 87.135370
iter 70 value 85.307845
iter 80 value 83.253516
iter 90 value 82.429077
iter 100 value 81.416187
final value 81.416187
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 107.483272
iter 10 value 93.686929
iter 20 value 91.705477
iter 30 value 85.073489
iter 40 value 84.603532
iter 50 value 83.507561
iter 60 value 82.623672
iter 70 value 81.655313
final value 81.652366
converged
Fitting Repeat 5
# weights: 103
initial value 104.128610
iter 10 value 93.528974
iter 20 value 86.990822
iter 30 value 86.140813
iter 40 value 85.417339
iter 50 value 85.028917
iter 60 value 83.920018
iter 70 value 83.280631
iter 80 value 83.243460
final value 83.243444
converged
Fitting Repeat 1
# weights: 305
initial value 100.563595
iter 10 value 94.415963
iter 20 value 90.201186
iter 30 value 87.949496
iter 40 value 83.890725
iter 50 value 81.671677
iter 60 value 81.302810
iter 70 value 80.895245
iter 80 value 79.987164
iter 90 value 79.701435
iter 100 value 79.690059
final value 79.690059
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.813308
iter 10 value 94.392278
iter 20 value 85.865250
iter 30 value 84.905726
iter 40 value 84.209298
iter 50 value 83.781295
iter 60 value 83.198786
iter 70 value 80.423680
iter 80 value 79.853531
iter 90 value 79.635225
iter 100 value 79.608169
final value 79.608169
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.613513
iter 10 value 92.280839
iter 20 value 88.462168
iter 30 value 84.931632
iter 40 value 83.477136
iter 50 value 81.431794
iter 60 value 81.135847
iter 70 value 80.871884
iter 80 value 80.740675
iter 90 value 80.728746
iter 100 value 80.711952
final value 80.711952
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 105.434351
iter 10 value 94.237418
iter 20 value 93.286541
iter 30 value 87.754295
iter 40 value 85.444722
iter 50 value 82.666741
iter 60 value 81.105309
iter 70 value 80.410053
iter 80 value 80.270104
iter 90 value 79.906188
iter 100 value 79.780409
final value 79.780409
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 103.000052
iter 10 value 94.296108
iter 20 value 93.676024
iter 30 value 86.349264
iter 40 value 84.069360
iter 50 value 83.499359
iter 60 value 83.307800
iter 70 value 83.172801
iter 80 value 81.298781
iter 90 value 80.154181
iter 100 value 79.797767
final value 79.797767
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 148.083642
iter 10 value 96.778521
iter 20 value 88.351516
iter 30 value 86.568123
iter 40 value 84.055421
iter 50 value 83.649832
iter 60 value 83.456581
iter 70 value 83.379759
iter 80 value 83.154136
iter 90 value 82.308826
iter 100 value 82.162348
final value 82.162348
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 132.015127
iter 10 value 94.502528
iter 20 value 92.922002
iter 30 value 83.463723
iter 40 value 81.700555
iter 50 value 81.141933
iter 60 value 81.104212
iter 70 value 79.943257
iter 80 value 79.672112
iter 90 value 79.401801
iter 100 value 79.279861
final value 79.279861
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.843630
iter 10 value 92.119286
iter 20 value 88.577974
iter 30 value 86.052678
iter 40 value 84.999820
iter 50 value 84.624125
iter 60 value 84.126092
iter 70 value 83.324840
iter 80 value 82.914241
iter 90 value 82.872160
iter 100 value 82.526881
final value 82.526881
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 129.004632
iter 10 value 97.021370
iter 20 value 93.139767
iter 30 value 88.232867
iter 40 value 86.719503
iter 50 value 84.625623
iter 60 value 83.529944
iter 70 value 83.108277
iter 80 value 81.287530
iter 90 value 80.596094
iter 100 value 80.334687
final value 80.334687
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.853423
iter 10 value 94.092926
iter 20 value 89.989893
iter 30 value 85.298539
iter 40 value 82.907779
iter 50 value 82.048754
iter 60 value 81.357668
iter 70 value 80.725733
iter 80 value 79.877248
iter 90 value 79.610801
iter 100 value 79.520123
final value 79.520123
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.080285
iter 10 value 93.397670
iter 20 value 93.397138
iter 30 value 93.396394
final value 93.395899
converged
Fitting Repeat 2
# weights: 103
initial value 95.711918
final value 94.485856
converged
Fitting Repeat 3
# weights: 103
initial value 95.749240
final value 94.485732
converged
Fitting Repeat 4
# weights: 103
initial value 97.412659
iter 10 value 94.486059
iter 20 value 94.484216
iter 20 value 94.484216
iter 20 value 94.484216
final value 94.484216
converged
Fitting Repeat 5
# weights: 103
initial value 94.534770
iter 10 value 94.116020
iter 20 value 93.176863
iter 30 value 93.084286
iter 40 value 93.080991
final value 93.080977
converged
Fitting Repeat 1
# weights: 305
initial value 95.248817
iter 10 value 94.350810
final value 94.331057
converged
Fitting Repeat 2
# weights: 305
initial value 122.854710
iter 10 value 94.489304
iter 20 value 94.484499
iter 30 value 94.310890
iter 40 value 93.787749
iter 50 value 87.362327
iter 60 value 87.361056
iter 70 value 87.353210
iter 80 value 83.108940
iter 90 value 82.384747
iter 100 value 82.379643
final value 82.379643
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 98.257046
iter 10 value 94.151919
iter 20 value 89.681869
iter 30 value 84.453417
iter 40 value 84.016915
iter 50 value 83.934247
iter 60 value 83.933893
iter 70 value 83.844726
iter 80 value 83.781888
iter 90 value 83.282012
iter 100 value 82.616233
final value 82.616233
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 94.458582
iter 10 value 87.742468
iter 20 value 84.909943
iter 30 value 84.252740
iter 40 value 84.251909
iter 50 value 84.247928
iter 60 value 83.900804
iter 70 value 82.917791
iter 80 value 81.744741
iter 90 value 81.117219
iter 100 value 80.874084
final value 80.874084
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 97.755764
iter 10 value 94.488412
iter 20 value 94.466094
iter 30 value 93.395767
iter 30 value 93.395767
iter 30 value 93.395767
final value 93.395767
converged
Fitting Repeat 1
# weights: 507
initial value 100.863659
iter 10 value 94.491810
iter 20 value 94.428874
iter 30 value 85.013227
iter 40 value 83.917462
iter 50 value 83.574694
iter 60 value 83.497210
iter 70 value 83.483655
iter 80 value 83.394161
iter 90 value 82.292194
iter 100 value 82.175106
final value 82.175106
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 95.699563
iter 10 value 94.481575
iter 20 value 87.643996
iter 30 value 86.731825
iter 40 value 86.730571
iter 50 value 86.215505
iter 60 value 84.252609
iter 70 value 83.613188
iter 80 value 83.543246
iter 90 value 83.533640
iter 100 value 83.532893
final value 83.532893
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 98.367579
iter 10 value 94.492560
iter 20 value 94.474230
iter 30 value 93.097470
iter 40 value 93.077823
iter 50 value 92.987679
iter 60 value 92.973596
final value 92.973567
converged
Fitting Repeat 4
# weights: 507
initial value 101.252764
iter 10 value 94.492476
iter 20 value 91.422072
iter 30 value 88.722367
iter 40 value 88.220571
iter 50 value 87.318114
iter 60 value 87.309746
iter 70 value 87.309682
iter 80 value 87.309254
iter 90 value 85.298034
iter 100 value 85.029841
final value 85.029841
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.740776
iter 10 value 94.491502
iter 20 value 92.071421
iter 30 value 85.721966
iter 40 value 85.671418
iter 50 value 85.669534
iter 60 value 84.269862
iter 70 value 83.336324
iter 80 value 79.854010
iter 90 value 78.339960
iter 100 value 78.072614
final value 78.072614
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 99.381919
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 94.778342
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 103.809795
final value 94.467391
converged
Fitting Repeat 4
# weights: 103
initial value 99.026201
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 94.531343
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 112.036538
final value 94.467391
converged
Fitting Repeat 2
# weights: 305
initial value 112.009296
final value 94.467391
converged
Fitting Repeat 3
# weights: 305
initial value 102.092304
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 95.651044
final value 93.079545
converged
Fitting Repeat 5
# weights: 305
initial value 96.532364
iter 10 value 93.111074
final value 93.109890
converged
Fitting Repeat 1
# weights: 507
initial value 105.204007
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 124.989937
iter 10 value 94.504537
final value 94.455556
converged
Fitting Repeat 3
# weights: 507
initial value 139.503387
iter 10 value 94.585919
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 117.319964
final value 94.467391
converged
Fitting Repeat 5
# weights: 507
initial value 118.487016
iter 10 value 94.437038
final value 94.436782
converged
Fitting Repeat 1
# weights: 103
initial value 107.251395
iter 10 value 94.556234
iter 20 value 94.477868
iter 30 value 94.476597
iter 40 value 94.048990
iter 50 value 87.505439
iter 60 value 82.763856
iter 70 value 81.978983
iter 80 value 81.543051
iter 90 value 81.322316
iter 100 value 81.256700
final value 81.256700
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 97.780546
iter 10 value 94.477630
iter 20 value 93.969980
iter 30 value 92.961340
iter 40 value 87.079180
iter 50 value 85.767971
iter 60 value 82.666847
iter 70 value 82.293666
iter 80 value 81.616233
iter 90 value 81.411526
final value 81.410259
converged
Fitting Repeat 3
# weights: 103
initial value 96.830887
iter 10 value 94.248424
iter 20 value 86.915336
iter 30 value 85.096874
iter 40 value 83.733121
iter 50 value 81.976164
iter 60 value 81.428267
iter 70 value 81.410270
final value 81.410259
converged
Fitting Repeat 4
# weights: 103
initial value 104.225878
iter 10 value 89.382771
iter 20 value 84.829620
iter 30 value 83.742134
iter 40 value 83.352186
iter 50 value 83.322070
iter 60 value 83.216211
iter 70 value 83.178212
final value 83.178136
converged
Fitting Repeat 5
# weights: 103
initial value 102.192549
iter 10 value 94.488438
iter 20 value 94.437686
iter 30 value 86.900526
iter 40 value 86.356322
iter 50 value 86.200574
iter 60 value 86.071362
iter 70 value 86.062081
iter 80 value 84.977637
iter 90 value 83.958779
iter 100 value 83.851239
final value 83.851239
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 100.276296
iter 10 value 89.587403
iter 20 value 82.901215
iter 30 value 82.330492
iter 40 value 81.200650
iter 50 value 80.843951
iter 60 value 80.419118
iter 70 value 80.074523
iter 80 value 79.372904
iter 90 value 78.189416
iter 100 value 78.057028
final value 78.057028
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 120.643409
iter 10 value 95.103917
iter 20 value 94.477855
iter 30 value 86.371813
iter 40 value 86.199799
iter 50 value 86.064083
iter 60 value 81.762418
iter 70 value 81.049017
iter 80 value 79.594926
iter 90 value 78.883992
iter 100 value 78.700426
final value 78.700426
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.765464
iter 10 value 94.383730
iter 20 value 84.757487
iter 30 value 83.837386
iter 40 value 83.579043
iter 50 value 80.685856
iter 60 value 80.221928
iter 70 value 79.795769
iter 80 value 78.963388
iter 90 value 78.490224
iter 100 value 78.310787
final value 78.310787
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 103.878713
iter 10 value 94.444146
iter 20 value 87.318439
iter 30 value 84.933041
iter 40 value 84.061113
iter 50 value 83.521580
iter 60 value 82.225764
iter 70 value 79.079249
iter 80 value 78.810901
iter 90 value 78.454311
iter 100 value 78.346256
final value 78.346256
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 119.265748
iter 10 value 94.531953
iter 20 value 91.801986
iter 30 value 90.551744
iter 40 value 82.829816
iter 50 value 82.122877
iter 60 value 81.723742
iter 70 value 81.574012
iter 80 value 81.419160
iter 90 value 81.079826
iter 100 value 80.977809
final value 80.977809
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.299973
iter 10 value 94.720386
iter 20 value 93.653463
iter 30 value 87.328255
iter 40 value 86.410661
iter 50 value 85.755662
iter 60 value 81.711178
iter 70 value 79.840234
iter 80 value 79.324073
iter 90 value 78.633623
iter 100 value 78.184157
final value 78.184157
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 104.781953
iter 10 value 96.359723
iter 20 value 84.552083
iter 30 value 82.333385
iter 40 value 82.105176
iter 50 value 81.389542
iter 60 value 81.196451
iter 70 value 80.984823
iter 80 value 78.815433
iter 90 value 78.373405
iter 100 value 78.026094
final value 78.026094
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 118.822758
iter 10 value 95.238369
iter 20 value 92.852412
iter 30 value 91.134066
iter 40 value 91.061150
iter 50 value 88.802210
iter 60 value 81.458014
iter 70 value 81.067664
iter 80 value 80.851039
iter 90 value 80.547878
iter 100 value 79.619486
final value 79.619486
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.368247
iter 10 value 94.271720
iter 20 value 90.965192
iter 30 value 85.676594
iter 40 value 83.331964
iter 50 value 80.158170
iter 60 value 79.323723
iter 70 value 79.147080
iter 80 value 79.134023
iter 90 value 79.086690
iter 100 value 78.671369
final value 78.671369
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.612388
iter 10 value 94.978412
iter 20 value 93.257864
iter 30 value 84.703690
iter 40 value 83.409651
iter 50 value 80.965447
iter 60 value 80.079551
iter 70 value 79.346599
iter 80 value 79.142091
iter 90 value 78.677435
iter 100 value 78.580374
final value 78.580374
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.022525
final value 94.485961
converged
Fitting Repeat 2
# weights: 103
initial value 96.475951
final value 94.485937
converged
Fitting Repeat 3
# weights: 103
initial value 99.304355
final value 94.485862
converged
Fitting Repeat 4
# weights: 103
initial value 107.376570
iter 10 value 94.486088
iter 20 value 94.383097
iter 30 value 86.962021
iter 40 value 86.955541
iter 50 value 86.955208
final value 86.955058
converged
Fitting Repeat 5
# weights: 103
initial value 101.084206
final value 94.485902
converged
Fitting Repeat 1
# weights: 305
initial value 98.295025
iter 10 value 94.489391
iter 20 value 94.484334
iter 30 value 89.187193
iter 40 value 83.324813
iter 50 value 82.359727
iter 60 value 82.029059
iter 70 value 82.027582
iter 80 value 82.011921
iter 90 value 81.819062
iter 100 value 81.610088
final value 81.610088
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 109.873538
iter 10 value 94.489144
iter 20 value 94.480782
iter 30 value 93.923578
iter 40 value 83.370926
iter 50 value 83.266005
final value 83.257749
converged
Fitting Repeat 3
# weights: 305
initial value 98.598877
iter 10 value 94.472518
iter 20 value 94.467529
iter 30 value 90.231988
final value 89.897817
converged
Fitting Repeat 4
# weights: 305
initial value 100.124092
iter 10 value 91.167230
iter 20 value 90.999891
iter 30 value 90.999122
iter 40 value 90.997354
final value 90.996999
converged
Fitting Repeat 5
# weights: 305
initial value 117.675437
iter 10 value 91.044466
iter 20 value 91.033970
iter 30 value 91.032047
iter 40 value 91.029337
iter 50 value 91.028295
iter 60 value 90.840045
iter 70 value 89.450991
iter 80 value 89.438265
iter 90 value 89.437893
final value 89.437794
converged
Fitting Repeat 1
# weights: 507
initial value 98.017158
iter 10 value 94.475709
iter 20 value 88.210303
iter 30 value 86.370173
final value 86.370041
converged
Fitting Repeat 2
# weights: 507
initial value 104.866367
iter 10 value 94.492349
iter 20 value 94.406989
iter 30 value 84.263700
iter 40 value 83.849521
iter 50 value 83.583763
iter 60 value 80.399941
iter 70 value 80.138120
iter 80 value 80.096782
iter 90 value 79.934320
final value 79.928334
converged
Fitting Repeat 3
# weights: 507
initial value 96.482956
iter 10 value 94.491350
iter 20 value 94.462087
iter 30 value 92.387091
iter 40 value 88.390371
iter 50 value 88.384877
iter 60 value 88.383990
iter 70 value 87.290396
iter 80 value 87.282928
iter 90 value 87.281335
iter 100 value 87.281017
final value 87.281017
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 109.800779
iter 10 value 94.492293
iter 20 value 94.439240
iter 30 value 87.542809
iter 40 value 87.406260
iter 50 value 85.963608
iter 60 value 85.963395
iter 70 value 85.043926
iter 80 value 83.187847
iter 90 value 82.367751
iter 100 value 81.979781
final value 81.979781
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 96.149145
iter 10 value 94.491860
iter 20 value 94.477106
iter 30 value 92.289706
iter 40 value 82.741106
iter 50 value 81.905335
iter 60 value 81.892088
iter 70 value 81.891741
iter 80 value 81.841292
iter 90 value 81.826866
final value 81.826741
converged
Fitting Repeat 1
# weights: 103
initial value 96.588521
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 98.552146
final value 93.356725
converged
Fitting Repeat 3
# weights: 103
initial value 99.351779
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.829074
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 99.275190
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 96.445297
iter 10 value 90.194469
iter 20 value 88.157418
iter 30 value 86.994684
iter 40 value 86.470727
iter 50 value 86.298122
final value 86.297847
converged
Fitting Repeat 2
# weights: 305
initial value 96.914928
iter 10 value 93.086920
final value 93.086891
converged
Fitting Repeat 3
# weights: 305
initial value 107.753233
iter 10 value 93.656850
iter 20 value 93.307911
iter 30 value 93.305807
iter 30 value 93.305806
iter 30 value 93.305806
final value 93.305806
converged
Fitting Repeat 4
# weights: 305
initial value 91.853000
iter 10 value 84.159480
iter 20 value 84.157880
iter 20 value 84.157880
final value 84.157880
converged
Fitting Repeat 5
# weights: 305
initial value 95.272893
iter 10 value 93.183870
final value 93.183866
converged
Fitting Repeat 1
# weights: 507
initial value 105.773042
iter 10 value 93.525212
final value 93.523811
converged
Fitting Repeat 2
# weights: 507
initial value 95.943182
iter 10 value 87.668057
iter 20 value 85.684112
final value 85.651213
converged
Fitting Repeat 3
# weights: 507
initial value 100.371122
iter 10 value 93.173409
final value 93.173405
converged
Fitting Repeat 4
# weights: 507
initial value 101.625723
final value 93.551913
converged
Fitting Repeat 5
# weights: 507
initial value 94.957623
final value 94.052910
converged
Fitting Repeat 1
# weights: 103
initial value 97.027750
iter 10 value 94.055382
iter 20 value 93.708572
iter 30 value 92.794637
iter 40 value 83.612738
iter 50 value 82.323598
iter 60 value 81.773552
iter 70 value 81.399254
iter 80 value 79.583914
iter 90 value 79.159418
iter 100 value 79.029549
final value 79.029549
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 114.649193
iter 10 value 94.055578
iter 20 value 93.985163
iter 30 value 93.889021
iter 40 value 92.893077
iter 50 value 92.823798
iter 60 value 92.804401
iter 70 value 91.227017
iter 80 value 82.261834
iter 90 value 80.391313
iter 100 value 80.105530
final value 80.105530
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 100.017504
iter 10 value 93.856014
iter 20 value 87.265369
iter 30 value 85.498462
iter 40 value 85.302114
iter 50 value 84.797788
iter 60 value 84.677418
iter 70 value 80.152144
iter 80 value 79.732327
iter 90 value 79.287411
iter 100 value 78.948052
final value 78.948052
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 102.328455
iter 10 value 94.421743
iter 20 value 92.196412
iter 30 value 86.357497
iter 40 value 84.848585
iter 50 value 83.541443
iter 60 value 83.299274
iter 70 value 82.979594
iter 80 value 80.387328
iter 90 value 80.180109
iter 100 value 79.299084
final value 79.299084
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 98.466159
iter 10 value 94.139113
iter 20 value 94.055616
iter 30 value 92.925211
iter 40 value 92.811354
iter 50 value 88.533611
iter 60 value 83.516560
iter 70 value 83.273102
iter 80 value 82.809128
iter 90 value 79.580704
iter 100 value 78.977286
final value 78.977286
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 106.959045
iter 10 value 94.140490
iter 20 value 92.849646
iter 30 value 92.743444
iter 40 value 92.318801
iter 50 value 84.579354
iter 60 value 83.150942
iter 70 value 82.810520
iter 80 value 82.104498
iter 90 value 81.810015
iter 100 value 81.684231
final value 81.684231
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 106.005693
iter 10 value 93.035509
iter 20 value 92.666738
iter 30 value 89.709649
iter 40 value 86.574349
iter 50 value 84.116079
iter 60 value 83.533231
iter 70 value 83.122580
iter 80 value 82.475899
iter 90 value 80.208498
iter 100 value 79.011434
final value 79.011434
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.773891
iter 10 value 93.917420
iter 20 value 84.664225
iter 30 value 83.932663
iter 40 value 82.649046
iter 50 value 81.759098
iter 60 value 80.240102
iter 70 value 79.408872
iter 80 value 79.303448
iter 90 value 79.201837
iter 100 value 78.970265
final value 78.970265
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 107.384159
iter 10 value 93.720693
iter 20 value 91.355151
iter 30 value 83.068691
iter 40 value 82.035981
iter 50 value 80.524623
iter 60 value 80.379267
iter 70 value 78.874642
iter 80 value 78.031028
iter 90 value 77.869516
iter 100 value 77.849980
final value 77.849980
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.325092
iter 10 value 94.065474
iter 20 value 93.234966
iter 30 value 92.845353
iter 40 value 90.349893
iter 50 value 83.620226
iter 60 value 82.099922
iter 70 value 79.680920
iter 80 value 79.095615
iter 90 value 78.713790
iter 100 value 78.487161
final value 78.487161
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.799840
iter 10 value 94.903277
iter 20 value 93.477577
iter 30 value 92.103376
iter 40 value 86.623563
iter 50 value 84.917034
iter 60 value 82.924763
iter 70 value 82.290706
iter 80 value 81.526839
iter 90 value 81.316503
iter 100 value 80.601474
final value 80.601474
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 118.637257
iter 10 value 95.460497
iter 20 value 93.832542
iter 30 value 87.910418
iter 40 value 86.303041
iter 50 value 82.359986
iter 60 value 80.865492
iter 70 value 79.762969
iter 80 value 78.503977
iter 90 value 77.744276
iter 100 value 77.219151
final value 77.219151
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.349019
iter 10 value 92.292562
iter 20 value 85.506360
iter 30 value 85.289359
iter 40 value 83.086606
iter 50 value 82.361892
iter 60 value 81.608051
iter 70 value 81.209885
iter 80 value 79.096369
iter 90 value 78.437325
iter 100 value 78.202899
final value 78.202899
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.490614
iter 10 value 96.318779
iter 20 value 90.563378
iter 30 value 86.620459
iter 40 value 86.394850
iter 50 value 85.305975
iter 60 value 80.133328
iter 70 value 79.434514
iter 80 value 78.094692
iter 90 value 77.642229
iter 100 value 77.430274
final value 77.430274
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 115.925057
iter 10 value 97.134112
iter 20 value 83.065012
iter 30 value 82.167494
iter 40 value 79.928888
iter 50 value 79.303176
iter 60 value 78.084357
iter 70 value 77.424816
iter 80 value 77.248418
iter 90 value 77.165468
iter 100 value 77.070032
final value 77.070032
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 95.391020
final value 94.054349
converged
Fitting Repeat 2
# weights: 103
initial value 94.831853
final value 94.054497
converged
Fitting Repeat 3
# weights: 103
initial value 98.217804
final value 94.054478
converged
Fitting Repeat 4
# weights: 103
initial value 95.784390
iter 10 value 93.837798
iter 20 value 93.836438
iter 30 value 92.691463
iter 40 value 92.691325
final value 92.691318
converged
Fitting Repeat 5
# weights: 103
initial value 98.167207
final value 94.054559
converged
Fitting Repeat 1
# weights: 305
initial value 95.673920
iter 10 value 94.057292
iter 20 value 93.280781
iter 30 value 83.974165
iter 40 value 83.516558
iter 50 value 82.516988
iter 60 value 82.045417
final value 82.045407
converged
Fitting Repeat 2
# weights: 305
initial value 94.613356
iter 10 value 94.057563
iter 20 value 94.051909
iter 30 value 93.357180
final value 93.357178
converged
Fitting Repeat 3
# weights: 305
initial value 111.774114
iter 10 value 93.879129
iter 20 value 93.841343
iter 30 value 93.836426
final value 93.836375
converged
Fitting Repeat 4
# weights: 305
initial value 95.519917
iter 10 value 94.056766
iter 20 value 94.049020
iter 30 value 87.851547
iter 40 value 87.188518
iter 50 value 86.780192
iter 60 value 85.012995
iter 70 value 82.495938
iter 80 value 82.446066
iter 90 value 82.443646
final value 82.442996
converged
Fitting Repeat 5
# weights: 305
initial value 94.877531
iter 10 value 93.840347
iter 20 value 92.832217
iter 30 value 92.691199
iter 40 value 92.567767
iter 50 value 88.923583
iter 60 value 88.914761
iter 70 value 88.712208
iter 80 value 87.462541
iter 90 value 78.451737
iter 100 value 76.626194
final value 76.626194
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 103.240750
iter 10 value 93.844728
iter 20 value 93.838375
final value 93.837849
converged
Fitting Repeat 2
# weights: 507
initial value 103.262005
iter 10 value 94.030976
iter 20 value 93.273732
iter 30 value 82.053101
iter 40 value 78.695136
iter 50 value 78.096664
iter 60 value 78.039567
iter 70 value 77.962917
iter 80 value 77.961971
iter 90 value 77.960703
iter 100 value 77.960561
final value 77.960561
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 103.785552
iter 10 value 94.060806
iter 20 value 94.052628
iter 30 value 92.954011
iter 40 value 87.288766
iter 50 value 86.045997
iter 60 value 85.752909
iter 70 value 83.975135
iter 80 value 81.186183
iter 90 value 80.650784
iter 100 value 80.222994
final value 80.222994
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 96.471729
iter 10 value 94.060489
iter 20 value 94.052934
iter 30 value 93.877744
iter 40 value 93.357655
iter 50 value 93.269915
iter 60 value 92.282347
iter 70 value 92.281614
iter 80 value 92.281099
iter 90 value 92.281055
iter 100 value 83.723381
final value 83.723381
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 108.612832
iter 10 value 92.698641
iter 20 value 92.684864
iter 30 value 92.679486
iter 40 value 92.577810
iter 50 value 92.556466
iter 60 value 92.556357
iter 70 value 92.547927
iter 80 value 87.344200
iter 90 value 84.482712
iter 100 value 82.611061
final value 82.611061
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 125.436861
final value 117.890295
converged
Fitting Repeat 2
# weights: 305
initial value 118.452681
iter 10 value 112.019169
iter 20 value 111.641459
final value 111.641314
converged
Fitting Repeat 3
# weights: 305
initial value 122.554990
final value 117.890295
converged
Fitting Repeat 4
# weights: 305
initial value 131.921100
final value 117.890295
converged
Fitting Repeat 5
# weights: 305
initial value 119.495730
final value 117.890295
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Thu Feb 2 10:05:33 2023
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: The `.data` argument of `add_column()` must have unique names as of tibble
3.0.0.
ℹ Use `.name_repair = "minimal"`.
ℹ The deprecated feature was likely used in the tibble package.
Please report the issue at <https://github.com/tidyverse/tibble/issues>.
2: `repeats` has no meaning for this resampling method.
3: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
53.688 0.749 78.066
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 37.033 | 0.360 | 38.347 | |
| FreqInteractors | 0.287 | 0.004 | 0.420 | |
| calculateAAC | 0.078 | 0.000 | 0.079 | |
| calculateAutocor | 0.707 | 0.032 | 0.755 | |
| calculateBE | 0.238 | 0.000 | 0.239 | |
| calculateCTDC | 0.131 | 0.000 | 0.144 | |
| calculateCTDD | 0.940 | 0.015 | 0.964 | |
| calculateCTDT | 0.299 | 0.000 | 0.299 | |
| calculateCTriad | 0.454 | 0.008 | 0.469 | |
| calculateDC | 0.148 | 0.004 | 0.157 | |
| calculateF | 0.713 | 0.000 | 0.726 | |
| calculateKSAAP | 0.144 | 0.004 | 0.150 | |
| calculateQD_Sm | 2.295 | 0.008 | 2.339 | |
| calculateTC | 2.450 | 0.064 | 2.534 | |
| calculateTC_Sm | 0.310 | 0.000 | 0.311 | |
| corr_plot | 38.342 | 0.303 | 40.340 | |
| enrichfindP | 0.427 | 0.016 | 15.100 | |
| enrichfind_hp | 0.034 | 0.008 | 1.381 | |
| enrichplot | 0.351 | 0.001 | 0.452 | |
| filter_missing_values | 0.002 | 0.000 | 0.001 | |
| getFASTA | 0.886 | 0.004 | 8.696 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.001 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.000 | 0.002 | 0.001 | |
| plotPPI | 0.074 | 0.001 | 0.114 | |
| pred_ensembel | 18.368 | 0.208 | 19.032 | |
| var_imp | 39.809 | 0.395 | 40.924 | |