This page was generated on 2023-02-03 02:36:07 -0000 (Fri, 03 Feb 2023).
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data MEDIPS
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* checking for file ‘MEDIPS/DESCRIPTION’ ... OK
* preparing ‘MEDIPS’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘MEDIPS.Rnw’ using Sweave
Loading required package: BSgenome
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: XVector
Attaching package: ‘Biostrings’
The following object is masked from ‘package:base’:
strsplit
Loading required package: rtracklayer
Loading required package: Rsamtools
No methods found in package ‘IRanges’ for request: ‘values’ when loading ‘MEDIPS’
Error: processing vignette 'MEDIPS.Rnw' failed with diagnostics:
chunk 8
Error in library(BSgenome.Hsapiens.UCSC.hg19) :
there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
--- failed re-building ‘MEDIPS.Rnw’
SUMMARY: processing the following file failed:
‘MEDIPS.Rnw’
Error: Vignette re-building failed.
Execution halted