| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-03 02:36:11 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the MultiBaC package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MultiBaC.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1285/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MultiBaC 1.9.0 (landing page) The package maintainer
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: MultiBaC |
| Version: 1.9.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MultiBaC_1.9.0.tar.gz |
| StartedAt: 2023-02-02 13:53:16 -0000 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 13:57:03 -0000 (Thu, 02 Feb 2023) |
| EllapsedTime: 227.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: MultiBaC.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MultiBaC.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MultiBaC_1.9.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/MultiBaC.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘MultiBaC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MultiBaC’ version ‘1.9.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MultiBaC’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
MultiBaC 12.862 0.083 14.660
inner_relPlot 12.658 0.008 13.973
explained_varPlot 12.604 0.000 13.264
plot_pca 12.538 0.004 13.844
plot 12.540 0.000 13.350
Q2_plot 12.176 0.008 12.234
batchCorrection 12.087 0.000 12.270
ARSyNbac 11.220 0.219 12.313
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘MultiBaC.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
MultiBaC.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL MultiBaC ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘MultiBaC’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MultiBaC)
MultiBaC.Rcheck/MultiBaC-Ex.timings
| name | user | system | elapsed | |
| ARSyNbac | 11.220 | 0.219 | 12.313 | |
| MultiBaC | 12.862 | 0.083 | 14.660 | |
| Q2_plot | 12.176 | 0.008 | 12.234 | |
| batchCorrection | 12.087 | 0.000 | 12.270 | |
| batchEstPlot | 1.056 | 0.012 | 1.145 | |
| createMbac | 0.471 | 0.000 | 0.473 | |
| explained_varPlot | 12.604 | 0.000 | 13.264 | |
| genMissingOmics | 1.225 | 0.003 | 1.274 | |
| genModelList | 0.610 | 0.000 | 0.655 | |
| inner_relPlot | 12.658 | 0.008 | 13.973 | |
| multiyeast | 0.003 | 0.000 | 0.003 | |
| plot | 12.54 | 0.00 | 13.35 | |
| plot_pca | 12.538 | 0.004 | 13.844 | |
| summary | 0.477 | 0.000 | 0.536 | |