| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-03 02:36:28 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the TAPseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TAPseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2006/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TAPseq 1.11.0 (landing page) Andreas R. Gschwind
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: TAPseq |
| Version: 1.11.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TAPseq |
| StartedAt: 2023-02-01 22:52:08 -0000 (Wed, 01 Feb 2023) |
| EndedAt: 2023-02-01 22:55:07 -0000 (Wed, 01 Feb 2023) |
| EllapsedTime: 179.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TAPseq
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* checking for file ‘TAPseq/DESCRIPTION’ ... OK
* preparing ‘TAPseq’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘tapseq_primer_design.Rmd’ using rmarkdown
Quitting from lines 99-106 (tapseq_primer_design.Rmd)
Error: processing vignette 'tapseq_primer_design.Rmd' failed with diagnostics:
BSgenome.Hsapiens.UCSC.hg38 package is not currently installed.
You first need to install it, which you can do with:
library(BiocManager)
install("BSgenome.Hsapiens.UCSC.hg38")
--- failed re-building ‘tapseq_primer_design.Rmd’
--- re-building ‘tapseq_target_genes.Rmd’ using rmarkdown
Performing log-normalization
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Performing log-normalization
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Using method 'umap'
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Using method 'umap'
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The magick package is required to crop "/tmp/RtmpOwghus/Rbuild1aca50651cdf1d/TAPseq/vignettes/tapseq_target_genes_files/figure-html/unnamed-chunk-5-1.png" but not available.
--- finished re-building ‘tapseq_target_genes.Rmd’
SUMMARY: processing the following file failed:
‘tapseq_primer_design.Rmd’
Error: Vignette re-building failed.
Execution halted