| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-03 02:36:28 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the TFHAZ package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/TFHAZ.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 2026/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| TFHAZ 1.21.0 (landing page) Gaia Ceddia
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: TFHAZ |
| Version: 1.21.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TFHAZ_1.21.0.tar.gz |
| StartedAt: 2023-02-02 22:18:37 -0000 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 22:25:10 -0000 (Thu, 02 Feb 2023) |
| EllapsedTime: 393.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: TFHAZ.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:TFHAZ.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings TFHAZ_1.21.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/TFHAZ.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘TFHAZ/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘TFHAZ’ version ‘1.21.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘TFHAZ’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
dense_zones 10.419 0.029 10.458
accumulation 6.980 0.135 7.498
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘TFHAZ.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
TFHAZ.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL TFHAZ ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘TFHAZ’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (TFHAZ)
TFHAZ.Rcheck/TFHAZ-Ex.timings
| name | user | system | elapsed | |
| Ishikawa | 0.085 | 0.012 | 0.097 | |
| TF_acc_w_0 | 1.045 | 0.011 | 1.056 | |
| TF_dense_w_0 | 0.175 | 0.000 | 0.175 | |
| TF_dense_w_10 | 0.170 | 0.004 | 0.174 | |
| TF_dense_w_100 | 0.166 | 0.016 | 0.181 | |
| TF_dense_w_1000 | 0.157 | 0.036 | 0.192 | |
| TF_dense_w_10000 | 0.187 | 0.032 | 0.220 | |
| accumulation | 6.980 | 0.135 | 7.498 | |
| base_dense_w_10 | 0.180 | 0.000 | 0.181 | |
| dense_zones | 10.419 | 0.029 | 10.458 | |
| high_accumulation_zones | 1.494 | 0.028 | 1.524 | |
| n_zones_PCA | 0.034 | 0.000 | 0.034 | |
| plot_accumulation | 0 | 0 | 0 | |
| plot_n_zones | 0.011 | 0.000 | 0.011 | |
| reg_dense_w_10 | 0.173 | 0.000 | 0.173 | |
| w_analysis | 0.008 | 0.004 | 0.012 | |