| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-03 02:35:45 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the biodbChebi package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 179/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.5.0 (landing page) Pierrick Roger
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: biodbChebi |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings biodbChebi_1.5.0.tar.gz |
| StartedAt: 2023-02-02 01:57:11 -0000 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 01:58:58 -0000 (Thu, 02 Feb 2023) |
| EllapsedTime: 107.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings biodbChebi_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/biodbChebi.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 2.779 0.187 5.796
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘biodbChebi.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2023-02-02 01:58:12.637][biodb::testContext]
biodb.INFO [2023-02-02 01:58:12.640][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:12.641][biodb::testContext] Test context - Generic tests
biodb.INFO [2023-02-02 01:58:12.643][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:12.644][biodb::testContext]
biodb.INFO [2023-02-02 01:58:12.665][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:12.668][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:12.678][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:12.679][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-02 01:58:12.681][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.686][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-02 01:58:12.714][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.720][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-02 01:58:12.721][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.726][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-02 01:58:12.728][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-02 01:58:12.729][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-02 01:58:12.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.735][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-02 01:58:12.736][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-02 01:58:12.738][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.743][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-02 01:58:12.745][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-02 01:58:12.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.750][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-02 01:58:12.751][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-02 01:58:12.753][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-02 01:58:12.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.758][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-02 01:58:12.760][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.765][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-02 01:58:12.767][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-02 01:58:12.768][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-02 01:58:12.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.774][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:12.775][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-02 01:58:12.777][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-02 01:58:12.778][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-02 01:58:12.780][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-02 01:58:12.781][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-02 01:58:12.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.786][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-02 01:58:12.788][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-02 01:58:12.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.793][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-02 01:58:12.795][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-02 01:58:12.796][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.800][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-02 01:58:12.802][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-02 01:58:12.803][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.807][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-02 01:58:12.809][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-02 01:58:12.810][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.814][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-02 01:58:12.816][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-02 01:58:12.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.821][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:12.823][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-02 01:58:12.827][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-02 01:58:12.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.832][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-02 01:58:12.834][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-02 01:58:12.835][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-02 01:58:12.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:12.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:12.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:12.845][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-02 01:58:12.905][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:12.929][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-02 01:58:12.930][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.932][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:12.933][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.934][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.936][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:12.937][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.938][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:12.940][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:12.941][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.942][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-02 01:58:12.944][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:12.945][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:12.946][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.948][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:12.948][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:12.948][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:12.948][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:12.948][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:12.949][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:12.950][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:12.952][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:12.953][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:12.954][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:12.955][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:12.957][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.958][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:12.959][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:12.961][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:12.962][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:12.963][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:12.965][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-02 01:58:12.967][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:12.969][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:12.970][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.971][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:12.973][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.974][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.975][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:12.977][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.978][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:12.979][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:12.981][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.982][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-02 01:58:12.983][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:12.985][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:12.986][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:12.988][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:12.988][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:12.988][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:12.988][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:12.988][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:12.989][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:12.990][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:12.991][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:12.993][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:12.994][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:12.995][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:12.997][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:12.998][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:12.999][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:13.000][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:13.002][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.003][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.005][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-02 01:58:13.007][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.009][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-02 01:58:13.010][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.011][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:13.013][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.014][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.015][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.017][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.018][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:13.020][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:13.021][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.023][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-02 01:58:13.024][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:13.025][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.027][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.028][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.029][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:13.031][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.032][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.033][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:13.035][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.036][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.037][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.039][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.040][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:13.041][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:13.043][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.044][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.046][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-02 01:58:13.048][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.050][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:13.051][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.052][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:13.054][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.055][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.056][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.058][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.059][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:13.061][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:13.062][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.064][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-02 01:58:13.065][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:13.066][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.068][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.069][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.070][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:13.072][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.073][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.074][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:13.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.078][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.079][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.081][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:13.082][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:13.083][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.084][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:13.090][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:13.091][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.114][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.140][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.141][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.142][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.177][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.192][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.193][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.199][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.206][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-02 01:58:13.212][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-02 01:58:13.214][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-02 01:58:13.217][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-02 01:58:13.219][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:13.221][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-02 01:58:13.223][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:13.225][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:13.227][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-02 01:58:13.229][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-02 01:58:13.231][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:13.233][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-02 01:58:13.235][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:13.237][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:13.239][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-02 01:58:13.241][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-02 01:58:13.243][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-02 01:58:13.245][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-02 01:58:13.247][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:13.249][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-02 01:58:13.251][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-02 01:58:13.253][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-02 01:58:13.255][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-02 01:58:13.257][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-02 01:58:13.259][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-02 01:58:13.261][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-02 01:58:13.263][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-02 01:58:13.264][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-02 01:58:13.266][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-02 01:58:13.268][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-02 01:58:13.270][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-02 01:58:13.272][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-02 01:58:13.274][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-02 01:58:13.276][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-02 01:58:13.278][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-02 01:58:13.280][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-02 01:58:13.282][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-02 01:58:13.284][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-02 01:58:13.286][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-02 01:58:13.288][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-02 01:58:13.290][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-02 01:58:13.292][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-02 01:58:13.294][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-02 01:58:13.296][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-02 01:58:13.298][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-02 01:58:13.300][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-02 01:58:13.302][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-02 01:58:13.304][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-02 01:58:13.306][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-02 01:58:13.308][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-02 01:58:13.310][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-02 01:58:13.312][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-02 01:58:13.314][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-02 01:58:13.316][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-02 01:58:13.318][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-02 01:58:13.320][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-02 01:58:13.322][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-02 01:58:13.324][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-02 01:58:13.326][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-02 01:58:13.328][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-02 01:58:13.330][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-02 01:58:13.332][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-02 01:58:13.334][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-02 01:58:13.336][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-02 01:58:13.338][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-02 01:58:13.340][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-02 01:58:13.342][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:13.344][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:13.346][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-02 01:58:13.348][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-02 01:58:13.349][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-02 01:58:13.351][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-02 01:58:13.353][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-02 01:58:13.355][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-02 01:58:13.357][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-02 01:58:13.359][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-02 01:58:13.361][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-02 01:58:13.363][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-02 01:58:13.365][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-02 01:58:13.367][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-02 01:58:13.369][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-02 01:58:13.371][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-02 01:58:13.373][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-02 01:58:13.381][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-02 01:58:13.383][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:13.388][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:13.389][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.392][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.419][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.465][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.467][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.511][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.519][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.536][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:13.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:13.554][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:13.567][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-02 01:58:13.570][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.571][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.574][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:13.575][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.578][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.579][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-02 01:58:13.581][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-02 01:58:13.582][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:13.583][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.585][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-02 01:58:13.586][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-02 01:58:13.587][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-02 01:58:13.589][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:13.590][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:13.590][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:13.590][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:13.592][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-02 01:58:13.593][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.594][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.596][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:13.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:13.598][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:13.599][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:13.601][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-02 01:58:13.601][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-02 01:58:13.602][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:13.603][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:13.605][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:13.606][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-02 01:58:13.606][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-02 01:58:13.615][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:13.617][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:13.619][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-02 01:58:13.621][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:13.623][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:13.625][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:13.657][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-02 01:58:13.658][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-02 01:58:13.664][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-02 01:58:13.670][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-02 01:58:13.675][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:13.677][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:13.679][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-02 01:58:13.680][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-02 01:58:13.701][biodb::testThat]
biodb.INFO [2023-02-02 01:58:13.703][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2023-02-02 01:58:13.704][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:13.705][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:13.711][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2023-02-02 01:58:13.717][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:13.721][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:13.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:13.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:13.735][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:13.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:13.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:13.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:13.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:13.770][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:13.771][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:13.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.774][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:13.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.802][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:13.804][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:13.805][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.806][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.857][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:13.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.867][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:13.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:13.870][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.871][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:13.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:13.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.882][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:13.884][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:13.885][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.887][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:13.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:13.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.899][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:13.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:13.902][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.903][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:13.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:13.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:13.917][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.919][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.921][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:13.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:13.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.931][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:13.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:13.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.935][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.937][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:13.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:13.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.946][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:13.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:13.949][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.951][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.952][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:13.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.962][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:13.964][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:13.965][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.966][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.978][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:13.980][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:13.981][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.983][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.984][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:13.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:13.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:13.996][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:13.997][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:13.998][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.015][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:14.161][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2023-02-02 01:58:14.168][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.228][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.239][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.245][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:14.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:14.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:14.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.298][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.353][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.385][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.395][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.396][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.397][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.414][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.431][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.432][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.435][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:14.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.451][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.457][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.468][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.471][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.472][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.500][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.506][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.507][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.508][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.510][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.543][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.546][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.548][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.570][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.580][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.581][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.583][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.584][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.600][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.606][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.611][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.616][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.620][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.622][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.637][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.642][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.648][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.653][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.654][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.663][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.664][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.686][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.697][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.699][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.700][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.702][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.735][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.737][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.738][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.739][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.767][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.774][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.776][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.810][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.811][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.814][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.830][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:14.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:14.833][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.835][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.842][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:14.844][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:14.845][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.846][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.854][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:14.856][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:14.857][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.858][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:14.868][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:14.869][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.870][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:14.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.882][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.890][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:14.893][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.894][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.902][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:14.905][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.906][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.913][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:14.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.918][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.932][ef$get] Asked field names are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.934][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:14.935][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.936][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.944][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:14.945][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:14.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.948][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:14.956][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:14.957][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:14.959][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:14.960][ef$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:14.969][biodb::testThat]
biodb.INFO [2023-02-02 01:58:14.970][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2023-02-02 01:58:14.971][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:14.973][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:14.992][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2023-02-02 01:58:15.002][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:15.008][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2023-02-02 01:58:15.009][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:15.011][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2023-02-02 01:58:15.013][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:15.073][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:15.075][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:15.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:15.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:15.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:15.087][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:15.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:15.089][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:15.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:15.094][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.097][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.098][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.131][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:15.133][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:15.134][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.135][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:15.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:15.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.146][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:15.147][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:15.149][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.150][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:15.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:15.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.164][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.165][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.177][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.179][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.180][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:15.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:15.203][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.204][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.206][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:15.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:15.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.215][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:15.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.218][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.219][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.221][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:15.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.233][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.234][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.245][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.248][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.249][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.251][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.261][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:15.262][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:15.264][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.265][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.267][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:15.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.276][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:15.277][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:15.279][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.280][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.282][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:15.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:15.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:15.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:15.350][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2023-02-02 01:58:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2023-02-02 01:58:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2023-02-02 01:58:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2023-02-02 01:58:15.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2023-02-02 01:58:15.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2023-02-02 01:58:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2023-02-02 01:58:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:15.376][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.377][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2023-02-02 01:58:15.378][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.380][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:15.383][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.385][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.388][ef$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:15.389][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2023-02-02 01:58:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:15.454][function(conn, opt)] With value "squalene".
biodb.DEBUG[2023-02-02 01:58:15.470][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-02 01:58:15.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:15.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-02 01:58:15.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:15.524][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-02 01:58:15.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:15.561][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:15.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:15.564][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:15.567][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:15.569][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2023-02-02 01:58:15.589][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.590][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:15.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.593][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.596][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.597][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.599][ef$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:15.601][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.603][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2023-02-02 01:58:15.604][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.605][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:15.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:15.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:15.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:15.754][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:15.759][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:15.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:15.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:15.765][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2023-02-02 01:58:15.788][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.790][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2023-02-02 01:58:15.791][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.792][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:15.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.838][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.870][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:15.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:15.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:15.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:15.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.908][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.921][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:15.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:15.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:15.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:15.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2023-02-02 01:58:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:15.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2023-02-02 01:58:15.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:15.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:15.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2023-02-02 01:58:15.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:15.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:15.972][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.974][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2023-02-02 01:58:15.975][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.976][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.983][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.984][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2023-02-02 01:58:15.986][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.987][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.994][biodb::testThat]
biodb.INFO [2023-02-02 01:58:15.996][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2023-02-02 01:58:15.997][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:15.998][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:16.003][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2023-02-02 01:58:17.585][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2023-02-02 01:58:20.020][biodb::testThat]
biodb.INFO [2023-02-02 01:58:20.022][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2023-02-02 01:58:20.023][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:20.024][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:21.317][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2023-02-02 01:58:22.449][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:22.451][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:22.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.453][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.455][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:22.456][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:22.457][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.459][ef$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:22.461][biodb::testThat]
biodb.INFO [2023-02-02 01:58:22.462][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2023-02-02 01:58:22.464][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:22.465][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:22.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:22.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:22.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:22.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.499][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:22.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:22.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:22.629][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:22.633][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:22.635][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:22.637][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:22.638][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:22.742][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:22.746][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:22.748][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:22.750][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:22.751][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2023-02-02 01:58:22.773][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-02 01:58:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-02 01:58:22.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:22.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:22.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:22.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:22.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:22.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:22.880][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-02 01:58:22.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:22.884][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-02 01:58:22.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:22.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:22.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:22.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:22.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:22.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:22.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:22.903][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2023-02-02 01:58:22.969][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:22.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2023-02-02 01:58:22.973][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:22.975][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2023-02-02 01:58:22.977][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:22.998][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:23.000][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:23.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:23.028][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.030][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.032][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.043][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:23.044][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:23.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.047][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.049][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:23.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:23.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.058][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:23.059][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:23.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.062][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:23.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:23.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:23.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:23.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.077][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:23.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:23.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.088][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.089][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.092][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.094][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.103][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.104][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.105][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.107][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.108][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:23.110][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.111][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.112][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.114][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.125][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.126][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.127][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.138][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.140][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:23.141][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.142][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.144][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.153][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:23.155][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:23.156][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.157][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.159][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:23.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.168][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:23.170][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:23.171][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.172][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.174][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:23.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.183][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.189][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.219][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.285][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2023-02-02 01:58:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.304][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.316][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:23.320][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:23.322][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-02 01:58:23.323][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:23.328][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-02 01:58:23.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.360][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:23.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.382][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:23.387][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:23.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-02 01:58:23.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:23.399][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-02 01:58:23.457][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:23.462][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:23.463][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:23.473][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:23.475][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:23.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:23.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.531][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.532][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.541][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:23.547][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2023-02-02 01:58:23.548][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:23.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2023-02-02 01:58:23.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:23.555][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2023-02-02 01:58:23.557][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:23.580][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:23.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:23.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.596][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.597][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:23.601][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.603][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.604][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.605][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.616][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:23.618][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:23.619][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.620][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.622][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:23.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.626][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:23.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:23.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.632][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.636][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.637][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.639][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.640][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.641][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.643][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.644][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:23.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.648][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.654][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.655][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.657][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:23.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.659][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:23.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.670][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:23.672][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:23.673][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.682][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:23.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:23.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.694][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:23.695][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:23.696][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.698][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:23.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.756][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2023-02-02 01:58:23.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:23.785][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.786][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.795][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:23.801][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2023-02-02 01:58:23.802][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:23.804][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2023-02-02 01:58:23.806][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:23.823][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2023-02-02 01:58:23.825][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:23.860][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:23.862][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:23.864][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:23.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:23.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:23.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:23.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:23.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:23.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:23.897][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.916][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.918][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:23.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:23.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.928][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:23.930][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:23.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.948][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.950][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:23.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:23.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.954][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.956][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:23.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:23.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.968][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:23.972][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.974][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:23.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.979][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.981][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:23.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:23.983][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.985][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.986][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.988][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:23.989][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.990][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.992][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.993][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:23.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:23.996][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:23.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:23.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:24.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.007][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.009][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.010][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.012][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.013][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.022][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:24.024][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:24.025][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.027][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.085][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2023-02-02 01:58:24.087][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.092][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.109][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.126][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:24.129][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2023-02-02 01:58:24.130][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:24.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2023-02-02 01:58:24.134][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:24.137][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2023-02-02 01:58:24.138][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:24.176][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:24.202][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:24.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.205][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:24.237][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.240][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.241][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.264][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:24.266][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:24.267][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.268][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.270][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:24.287][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:24.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.290][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:24.293][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:24.294][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.296][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.316][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.317][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.319][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.320][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.322][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.323][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.325][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:24.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.345][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.348][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.350][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.352][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:24.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:24.354][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.355][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.358][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:24.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:24.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.383][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.385][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.386][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.387][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.389][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:24.408][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:24.410][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.439][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.502][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2023-02-02 01:58:24.503][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.526][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:24.556][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2023-02-02 01:58:24.557][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:24.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2023-02-02 01:58:24.561][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:24.566][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2023-02-02 01:58:24.568][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:24.591][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:24.592][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:24.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:24.613][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.614][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.616][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.617][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.628][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:24.630][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:24.632][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.633][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.635][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:24.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:24.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.644][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:24.646][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:24.647][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.649][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:24.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:24.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.660][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:24.662][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:24.664][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.665][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:24.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:24.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.678][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.679][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.681][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.683][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:24.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.692][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.694][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.695][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.697][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.698][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.708][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:24.709][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.711][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.712][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.714][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:24.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.725][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.726][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.727][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.729][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:24.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.739][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:24.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:24.742][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.743][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.745][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:24.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:24.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.763][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.765][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.766][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.768][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.769][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:24.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:24.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.779][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:24.780][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:24.782][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.783][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.785][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:24.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:24.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.795][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:24.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.855][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2023-02-02 01:58:24.857][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.863][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:24.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:24.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:24.890][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2023-02-02 01:58:24.892][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:24.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2023-02-02 01:58:24.896][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:24.911][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2023-02-02 01:58:24.913][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:24.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:24.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:24.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:24.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:24.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:24.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:24.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:24.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:24.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:24.975][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.978][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.980][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.991][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:24.993][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:24.994][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:24.996][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:24.997][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:24.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:25.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.015][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.018][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.020][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.035][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.036][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.048][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.051][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.052][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.054][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.064][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.065][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.067][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.068][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.070][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.080][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.081][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.083][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.084][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.086][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.098][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.100][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.111][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.113][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.115][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.127][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.129][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.130][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.131][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.133][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.143][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.144][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.147][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.164][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:25.220][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2023-02-02 01:58:25.222][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.241][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:25.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:25.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:25.250][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:25.258][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:25.259][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:25.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:25.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:25.263][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2023-02-02 01:58:25.265][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:25.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2023-02-02 01:58:25.269][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:25.283][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2023-02-02 01:58:25.285][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:25.324][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:25.325][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:25.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:25.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:25.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:25.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:25.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:25.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:25.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:25.369][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.372][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.374][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.401][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:25.403][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:25.404][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.420][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.422][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:25.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:25.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.432][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.435][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.436][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.438][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.449][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.450][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.452][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.453][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.464][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.466][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.468][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.469][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.481][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.483][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.484][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.485][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.487][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.490][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.492][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.493][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.504][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.505][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.507][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.509][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.520][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.523][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.526][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.572][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.573][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.575][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.576][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.578][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.587][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.589][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.590][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.592][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.609][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.615][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.621][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:25.666][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2023-02-02 01:58:25.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:25.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:25.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:25.687][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:25.695][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:25.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:25.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:25.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:25.701][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2023-02-02 01:58:25.703][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:25.705][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2023-02-02 01:58:25.707][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:25.710][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2023-02-02 01:58:25.711][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:25.734][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:25.736][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:25.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:25.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:25.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:25.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:25.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:25.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:25.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:25.768][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.771][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.772][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:25.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:25.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.798][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:25.800][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:25.801][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.802][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.804][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:25.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:25.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.838][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.839][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.842][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.860][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:25.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:25.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.869][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.870][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.872][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.873][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:25.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:25.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.901][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.904][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.906][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:25.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.915][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.916][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:25.918][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.919][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.921][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.922][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.925][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.926][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.935][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.939][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:25.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.950][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.951][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.953][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.954][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:25.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:25.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.964][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.966][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.967][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.968][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.970][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:25.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:25.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.979][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.980][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.982][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.983][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:25.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:25.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:25.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:25.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.010][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.057][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2023-02-02 01:58:26.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.076][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.082][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.083][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.092][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:26.098][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2023-02-02 01:58:26.099][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:26.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2023-02-02 01:58:26.110][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:26.112][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2023-02-02 01:58:26.114][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:26.137][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:26.139][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:26.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.143][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:26.159][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.163][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.174][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.176][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.177][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.179][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.180][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.190][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.191][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.194][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.196][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.221][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.222][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.224][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.225][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.239][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.240][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.243][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.254][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.255][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.258][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.260][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.263][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.264][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.266][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.275][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.276][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.278][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.279][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.291][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:26.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:26.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.295][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.297][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:26.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:26.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.306][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:26.307][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:26.309][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.310][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.320][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:26.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:26.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.330][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:26.332][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:26.334][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.335][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.337][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:26.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:26.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.414][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2023-02-02 01:58:26.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.421][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:26.449][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2023-02-02 01:58:26.451][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:26.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2023-02-02 01:58:26.455][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:26.458][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2023-02-02 01:58:26.459][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:26.499][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:26.501][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:26.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:26.522][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.524][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.527][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.538][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.540][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.541][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.542][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.544][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.554][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.565][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.567][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.582][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.584][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.596][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.599][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.600][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.612][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.613][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.616][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.618][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.620][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.621][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.623][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.625][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.635][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.638][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.639][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.650][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:26.652][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:26.653][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.655][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.657][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:26.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:26.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.666][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:26.668][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:26.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.671][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.673][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:26.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.682][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:26.684][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:26.685][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.687][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.689][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:26.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.698][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.704][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.716][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:26.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.761][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2023-02-02 01:58:26.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:26.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:26.806][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2023-02-02 01:58:26.808][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:26.810][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2023-02-02 01:58:26.812][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:26.814][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2023-02-02 01:58:26.816][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:26.856][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:26.858][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:26.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:26.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:26.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:26.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:26.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:26.874][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:26.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:26.879][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.881][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.883][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.884][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:26.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:26.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.896][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.897][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.899][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.900][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:26.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:26.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.912][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.913][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.915][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.916][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:26.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:26.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.931][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.932][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.944][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.946][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.947][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.948][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:26.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.960][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.962][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:26.964][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.965][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.967][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.968][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.970][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.971][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.973][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:26.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:26.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.983][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.985][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.986][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.987][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:26.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:26.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:26.999][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.003][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.004][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.016][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.018][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.019][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.021][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.023][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.042][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:27.044][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:27.046][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.047][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:27.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:27.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.060][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.066][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.127][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2023-02-02 01:58:27.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.148][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.149][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.150][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.158][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.160][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.161][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.162][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:27.164][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2023-02-02 01:58:27.165][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:27.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2023-02-02 01:58:27.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:27.176][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2023-02-02 01:58:27.177][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:27.200][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:27.202][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:27.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.217][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.218][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:27.222][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.224][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.227][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.238][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.240][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.241][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.242][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.244][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.254][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.255][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.257][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.258][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:27.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:27.281][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.282][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.284][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:27.286][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:27.287][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.289][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.290][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:27.292][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:27.293][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.295][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.296][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:27.298][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.301][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.302][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.315][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.316][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.328][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.329][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.330][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.332][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.334][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.343][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.345][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.346][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.348][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.349][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.359][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:27.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:27.362][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.364][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.371][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.383][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.428][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2023-02-02 01:58:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.447][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.448][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.458][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.459][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:27.463][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2023-02-02 01:58:27.465][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:27.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2023-02-02 01:58:27.469][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:27.472][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2023-02-02 01:58:27.473][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:27.538][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:27.540][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:27.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.571][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:27.575][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.579][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.589][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.591][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.592][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.594][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.595][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.604][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.607][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.608][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.619][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:27.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:27.622][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.623][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:27.626][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:27.627][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.629][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.630][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:27.632][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:27.633][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.634][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.636][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:27.637][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.639][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.640][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.642][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:27.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.651][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.652][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.654][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.655][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.657][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:27.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.666][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.667][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.670][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.672][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:27.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.683][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.684][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.685][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.696][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:27.698][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.700][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.719][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:27.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.769][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2023-02-02 01:58:27.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:27.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:27.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:27.802][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2023-02-02 01:58:27.804][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:27.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2023-02-02 01:58:27.808][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:27.810][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2023-02-02 01:58:27.812][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:27.850][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:27.868][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:27.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:27.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:27.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:27.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:27.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:27.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:27.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:27.904][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.907][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.908][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:27.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:27.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.935][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.937][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.938][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.939][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.941][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:27.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:27.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.966][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.968][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.969][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.971][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:27.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:27.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.984][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:27.985][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:27.987][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.988][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.990][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:27.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:27.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:27.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:27.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.001][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.002][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.003][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.014][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.016][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.017][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.018][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.020][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.021][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.023][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.024][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.036][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.038][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.039][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.041][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.058][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.061][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.063][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.064][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.074][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.075][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.078][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.079][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.088][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.090][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.091][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.093][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.120][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.126][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:28.163][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2023-02-02 01:58:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:28.180][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:28.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:28.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:28.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:28.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:28.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:28.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:28.196][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2023-02-02 01:58:28.197][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:28.200][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2023-02-02 01:58:28.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:28.204][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2023-02-02 01:58:28.205][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:28.243][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:28.245][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:28.247][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:28.248][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:28.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:28.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:28.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:28.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:28.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:28.280][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.305][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.307][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.309][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.336][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:28.337][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:28.339][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.340][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.342][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.367][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:28.368][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:28.370][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.371][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:28.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:28.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.398][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:28.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:28.401][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.402][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:28.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:28.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.425][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.427][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.428][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.429][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.442][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.443][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.444][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.446][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.447][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.450][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.452][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.453][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.462][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.465][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.467][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.478][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.479][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.480][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.482][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.508][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.510][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.512][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.514][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.534][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.537][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.538][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.540][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.571][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.581][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:28.632][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2023-02-02 01:58:28.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.639][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.645][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:28.650][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:28.652][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:28.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:28.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:28.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:28.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:28.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:28.666][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2023-02-02 01:58:28.667][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:28.670][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2023-02-02 01:58:28.671][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:28.679][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2023-02-02 01:58:28.681][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:28.719][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:28.721][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:28.739][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:28.740][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:28.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:28.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:28.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:28.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:28.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:28.773][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.774][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.777][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.803][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:28.805][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:28.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.807][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:28.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.818][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:28.820][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:28.821][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.822][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:28.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:28.836][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.837][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:28.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:28.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.850][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.854][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:28.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.865][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.867][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:28.868][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.870][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.871][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.873][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.874][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.875][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:28.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:28.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.886][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.890][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.892][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:28.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.920][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.923][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.924][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.926][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.939][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.940][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:28.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.951][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.952][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.954][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.955][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.957][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:28.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.972][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.983][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:28.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:28.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:28.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.026][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2023-02-02 01:58:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:29.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:29.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:29.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:29.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:29.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:29.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:29.059][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2023-02-02 01:58:29.061][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:29.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2023-02-02 01:58:29.065][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:29.079][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2023-02-02 01:58:29.081][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:29.119][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:29.121][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:29.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:29.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:29.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:29.149][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:29.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:29.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:29.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:29.156][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.157][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.175][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.184][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.212][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:29.214][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:29.215][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.216][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:29.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.243][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:29.244][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:29.246][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.247][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:29.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.274][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:29.275][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:29.277][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.278][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:29.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.292][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.293][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.320][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:29.321][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:29.323][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.324][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.326][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:29.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.328][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.330][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:29.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.343][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.344][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.355][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:29.356][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:29.358][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.359][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.361][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:29.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:29.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.370][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:29.372][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:29.373][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.374][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.376][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:29.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:29.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:29.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.389][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.391][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:29.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:29.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.467][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2023-02-02 01:58:29.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.479][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:29.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:29.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:29.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:29.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:29.498][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:29.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:29.500][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2023-02-02 01:58:29.502][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:29.504][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2023-02-02 01:58:29.506][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:29.523][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2023-02-02 01:58:29.525][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:29.559][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:29.561][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:29.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:29.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:29.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:29.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:29.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:29.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:29.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:29.596][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.598][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.615][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.617][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.627][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:29.629][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:29.630][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.648][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.650][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:29.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:29.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.659][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:29.660][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:29.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.691][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.693][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:29.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:29.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:29.704][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:29.706][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.723][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.725][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:29.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:29.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.734][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.736][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.737][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.738][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:29.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.749][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:29.751][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:29.752][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.753][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.755][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:29.757][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.759][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.761][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:29.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.770][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.773][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.774][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:29.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.794][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:29.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:29.797][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.798][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:29.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:29.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.809][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:29.810][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:29.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.813][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.815][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:29.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:29.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.824][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:29.826][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:29.827][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.828][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.830][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:29.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:29.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:29.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:29.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:29.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.899][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2023-02-02 01:58:29.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:29.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:29.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:29.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:29.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:29.969][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:29.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:29.973][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:29.975][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:30.008][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.035][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.040][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.057][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.074][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.087][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.108][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.114][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.132][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.153][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.171][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.193][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.199][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.219][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.220][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.221][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.229][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.233][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.240][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.284][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.285][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.294][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.327][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.413][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.420][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.431][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.432][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.450][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.451][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.517][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.540][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.582][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.599][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.607][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.648][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.650][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.705][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:30.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:30.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:30.726][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:30.727][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:30.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:30.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.783][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:30.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:30.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:30.877][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:30.881][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:30.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2023-02-02 01:58:30.885][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:30.899][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2023-02-02 01:58:30.903][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:30.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:30.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2023-02-02 01:58:30.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:30.927][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2023-02-02 01:58:30.931][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:30.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:30.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:31.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:31.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:31.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:31.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:31.232][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2023-02-02 01:58:31.233][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:31.235][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2023-02-02 01:58:31.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:31.251][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2023-02-02 01:58:31.253][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:31.275][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:31.277][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:31.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:31.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:31.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:31.289][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:31.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:31.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:31.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:31.296][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.298][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.299][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.300][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.302][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.311][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:31.313][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:31.314][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.315][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.317][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:31.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:31.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.326][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:31.328][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:31.329][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.330][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.332][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:31.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:31.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.341][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:31.343][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:31.344][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.346][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.347][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:31.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:31.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.360][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.361][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.363][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.372][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.374][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.375][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.376][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.387][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:31.389][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:31.390][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.392][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.393][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:31.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:31.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.403][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.405][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.406][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.407][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.419][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:31.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.423][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.425][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:31.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:31.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.435][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:31.436][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:31.437][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.439][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.440][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:31.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:31.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.450][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:31.451][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.454][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:31.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:31.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.481][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:31.526][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2023-02-02 01:58:31.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.533][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:31.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:31.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:31.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:31.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:31.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:31.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:31.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:31.581][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:31.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:31.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:31.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:31.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:31.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:31.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:31.599][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2023-02-02 01:58:31.600][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:31.603][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2023-02-02 01:58:31.605][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:31.611][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2023-02-02 01:58:31.613][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:31.653][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:31.655][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:31.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:31.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:31.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:31.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:31.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:31.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:31.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:31.709][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.711][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.713][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.714][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.742][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:31.744][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:31.745][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.747][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:31.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:31.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.783][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:31.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:31.785][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.803][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.805][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:31.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:31.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:31.816][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:31.817][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.818][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:31.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:31.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.845][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.848][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.850][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:31.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.861][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.863][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:31.864][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.866][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.868][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:31.869][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:31.871][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.872][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:31.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.884][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.885][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.886][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.888][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:31.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.900][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:31.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:31.903][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.904][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:31.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:31.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.916][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:31.917][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:31.919][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.920][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:31.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.931][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:31.933][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:31.934][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.935][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:31.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:31.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:31.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:31.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:31.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:32.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:32.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.008][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2023-02-02 01:58:32.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.022][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.086][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:32.090][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:32.092][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:32.094][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:32.096][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:32.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.164][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.166][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.192][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.197][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.198][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.208][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.213][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.255][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.315][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.327][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.328][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.373][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.376][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.405][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.406][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.440][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.460][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.462][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.463][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.476][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.482][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.494][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.527][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.528][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.544][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.584][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.597][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.599][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.610][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.647][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.671][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.716][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.834][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:32.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:32.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:32.896][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:32.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:32.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:32.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:32.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:32.928][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:32.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:32.998][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:33.002][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:33.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2023-02-02 01:58:33.007][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:33.009][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2023-02-02 01:58:33.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.082][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.130][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.158][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.222][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.247][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.255][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.276][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.277][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.279][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.298][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.309][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.310][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.341][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.342][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.343][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.392][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.394][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.397][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.414][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.510][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.511][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.542][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.543][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.552][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.555][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.574][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.576][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.590][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.602][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.609][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.623][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.640][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.747][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:33.768][biodb::testThat]
biodb.INFO [2023-02-02 01:58:33.770][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2023-02-02 01:58:33.771][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:33.772][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-02 01:58:33.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-02 01:58:33.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.815][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.836][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:33.889][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:33.893][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:33.895][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-02 01:58:33.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:33.898][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-02 01:58:33.902][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.903][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.904][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:33.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:33.942][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-02 01:58:33.944][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:33.945][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-02 01:58:33.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:33.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:33.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:33.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:33.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:33.964][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:33.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:33.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:33.981][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:33.985][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:33.987][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-02 01:58:33.989][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:33.990][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-02 01:58:33.994][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:33.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:33.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:33.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.007][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.009][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.017][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.022][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.024][private$selectFields]
biodb.TRACE[2023-02-02 01:58:34.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:34.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:34.027][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.030][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.031][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.033][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.034][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.035][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.037][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.038][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.039][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.040][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.042][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.043][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.044][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.046][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.047][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-02 01:58:34.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.099][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.105][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.106][private$selectFields]
biodb.TRACE[2023-02-02 01:58:34.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:34.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:34.110][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.111][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.113][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.115][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.117][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.118][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.119][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.121][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.122][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.123][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.127][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.129][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.130][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:34.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.148][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:34.149][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:34.151][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:34.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:34.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:34.361][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:34.379][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:34.381][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-02 01:58:34.383][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:34.386][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-02 01:58:34.390][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:34.394][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:34.396][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-02 01:58:34.397][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:34.419][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-02 01:58:34.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:34.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.498][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.501][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.509][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:34.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:34.586][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:34.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.633][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.641][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.647][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.648][private$selectFields]
biodb.TRACE[2023-02-02 01:58:34.649][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:34.651][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:34.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.653][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.655][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.656][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.658][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.659][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.660][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.662][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.663][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.666][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.667][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.668][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.670][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.671][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.672][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:34.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-02 01:58:34.692][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.693][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.774][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.775][private$selectFields]
biodb.TRACE[2023-02-02 01:58:34.777][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:34.778][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:34.779][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.780][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.782][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.783][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.784][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.786][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.787][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.788][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.789][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.791][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.805][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.807][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.808][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.809][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.811][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.812][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:34.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.824][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.830][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:34.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.844][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:34.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.858][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.859][private$selectFields]
biodb.TRACE[2023-02-02 01:58:34.860][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:34.862][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:34.863][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.864][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.866][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.867][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.869][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.873][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.874][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.875][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.877][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:34.878][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.879][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.881][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.882][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.883][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:34.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.890][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:34.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-02 01:58:34.903][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:34.905][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:34.916][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:34.923][biodb::testThat]
biodb.INFO [2023-02-02 01:58:34.924][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2023-02-02 01:58:34.926][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:34.927][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:34.932][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-02 01:58:34.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-02 01:58:34.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:34.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:34.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:34.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:34.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:34.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:34.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:34.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:34.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:34.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:34.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:35.038][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.046][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.048][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-02 01:58:35.050][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.052][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-02 01:58:35.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.082][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.089][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.095][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.097][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-02 01:58:35.099][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.101][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-02 01:58:35.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.115][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.117][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.130][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.137][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.141][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-02 01:58:35.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.146][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-02 01:58:35.149][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:35.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.174][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.181][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.186][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.187][private$selectFields]
biodb.TRACE[2023-02-02 01:58:35.188][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:35.189][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:35.191][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.194][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.195][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.196][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.197][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.199][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.200][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.201][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.203][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.204][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.205][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.209][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.211][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:35.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.217][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.223][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.229][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-02 01:58:35.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.241][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.257][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.258][private$selectFields]
biodb.TRACE[2023-02-02 01:58:35.260][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:35.261][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:35.262][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.268][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.272][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.273][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.274][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.276][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.277][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.278][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.280][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.281][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.282][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.300][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:35.301][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:35.303][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:35.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.325][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:35.412][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.417][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.419][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-02 01:58:35.420][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.422][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-02 01:58:35.426][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.430][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.432][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-02 01:58:35.434][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.436][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-02 01:58:35.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.460][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.471][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.492][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.498][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.516][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.524][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.529][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:35.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.534][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:35.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.548][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.549][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.563][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.565][private$selectFields]
biodb.TRACE[2023-02-02 01:58:35.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:35.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:35.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.571][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.574][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.592][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.593][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.595][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.596][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.597][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.598][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.608][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.609][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.610][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.612][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.613][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:35.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-02 01:58:35.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.648][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.659][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.660][private$selectFields]
biodb.TRACE[2023-02-02 01:58:35.662][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:35.663][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:35.664][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.666][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.667][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.669][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.670][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.672][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.673][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.674][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.676][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.677][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.678][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.680][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.681][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.683][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.684][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.685][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:35.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:35.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.720][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.733][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.735][private$selectFields]
biodb.TRACE[2023-02-02 01:58:35.736][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:35.737][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:35.739][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.740][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.742][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.743][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.744][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.747][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.748][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.749][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.751][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.752][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:35.754][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.755][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.758][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.759][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:35.761][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.766][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:35.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.777][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-02 01:58:35.779][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:35.780][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:35.791][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:35.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:35.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:35.798][biodb::testThat]
biodb.INFO [2023-02-02 01:58:35.800][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2023-02-02 01:58:35.801][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:35.802][biodb::testThat]
biodb.TRACE[2023-02-02 01:58:35.806][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2023-02-02 01:58:35.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2023-02-02 01:58:35.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.823][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:35.926][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.930][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.932][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2023-02-02 01:58:35.934][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.936][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2023-02-02 01:58:35.939][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.940][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:35.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:35.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:35.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:35.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:35.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:35.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:35.975][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:35.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:35.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2023-02-02 01:58:35.984][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:35.986][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2023-02-02 01:58:35.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:35.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:35.992][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.025][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.74*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:36.029][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:36.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "94c7655c8f372fb2982c15119402bcba".
biodb.TRACE[2023-02-02 01:58:36.032][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:36.034][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/94c7655c8f372fb2982c15119402bcba.content".
biodb.DEBUG[2023-02-02 01:58:36.037][private$bdb$entriesToDataframe] 2 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:36.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.065][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.076][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.077][private$selectFields]
biodb.TRACE[2023-02-02 01:58:36.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:36.080][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:36.081][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.082][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.084][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.086][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.088][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.089][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.093][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.094][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.096][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.097][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.098][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.100][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.101][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.103][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.104][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:36.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2023-02-02 01:58:36.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.152][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.154][private$selectFields]
biodb.TRACE[2023-02-02 01:58:36.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:36.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:36.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.161][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.162][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.163][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.167][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.169][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.170][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.172][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.173][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.174][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.177][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.178][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:36.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.185][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.191][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:36.198][private$entriesToListOfDataframes] Converted 2 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:36.200][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:36.230][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.241][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:36.330][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:36.335][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:36.336][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2023-02-02 01:58:36.338][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:36.340][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2023-02-02 01:58:36.344][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:36.348][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:36.350][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2023-02-02 01:58:36.352][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:36.354][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2023-02-02 01:58:36.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.369][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.370][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.399][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.402][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.432][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.437][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.454][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2023-02-02 01:58:36.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.458][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.459][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.467][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.483][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.485][private$selectFields]
biodb.TRACE[2023-02-02 01:58:36.486][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:36.488][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:36.489][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.498][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.501][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.502][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.504][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.505][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.506][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.508][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.509][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.510][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.512][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.513][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.514][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.516][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.517][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.524][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.530][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.535][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2023-02-02 01:58:36.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.547][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.564][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.565][private$selectFields]
biodb.TRACE[2023-02-02 01:58:36.566][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:36.567][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:36.569][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.570][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.572][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.573][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.574][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.576][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.577][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.578][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.580][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.581][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.582][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.584][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.586][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.588][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.589][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:36.590][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.607][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2023-02-02 01:58:36.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.636][private$selectFields]
biodb.TRACE[2023-02-02 01:58:36.638][private$selectFields] Fields is null: FALSE
biodb.TRACE[2023-02-02 01:58:36.639][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2023-02-02 01:58:36.640][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.642][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.643][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.644][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.646][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.647][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.648][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.650][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.651][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2023-02-02 01:58:36.655][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.658][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.659][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.660][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2023-02-02 01:58:36.662][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2023-02-02 01:58:36.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2023-02-02 01:58:36.682][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2023-02-02 01:58:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:36.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2023-02-02 01:58:36.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:36.718][biodb::testThat]
biodb.INFO [2023-02-02 01:58:36.719][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2023-02-02 01:58:36.720][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:36.722][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:36.724][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2023-02-02 01:58:36.726][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:36.728][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2023-02-02 01:58:36.730][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:36.733][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2023-02-02 01:58:36.734][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:36.754][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:36.756][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:36.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.769][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:36.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:36.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:36.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:36.776][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.777][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.779][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.780][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.791][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:36.793][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:36.794][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.795][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.797][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:36.798][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:36.800][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.801][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:36.805][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:36.806][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.808][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.809][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:36.811][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:36.812][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.813][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.815][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:36.816][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:36.818][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.819][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.821][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:36.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:36.824][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.825][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:36.829][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.831][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.832][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:36.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:36.835][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.837][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.839][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:36.840][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:36.841][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.843][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.844][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:36.846][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:36.847][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.848][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:36.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:36.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:36.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:36.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:36.913][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2023-02-02 01:58:36.914][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2023-02-02 01:58:36.931][biodb::testThat]
biodb.INFO [2023-02-02 01:58:36.932][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2023-02-02 01:58:36.933][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:36.934][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:36.948][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2023-02-02 01:58:36.949][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2023-02-02 01:58:36.951][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2023-02-02 01:58:36.953][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2023-02-02 01:58:36.958][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2023-02-02 01:58:36.962][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2023-02-02 01:58:36.963][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:36.985][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2023-02-02 01:58:36.987][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:36.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:36.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:36.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:36.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:37.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:37.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:37.006][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.009][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.010][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.021][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:37.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:37.024][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.026][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.027][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:37.029][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:37.030][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.031][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:37.035][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:37.036][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.037][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.041][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.042][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.043][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.045][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.046][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.048][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.049][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.050][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:37.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:37.053][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.054][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.058][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.059][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.060][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.062][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.063][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.065][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.066][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.068][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:37.069][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:37.070][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.072][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.073][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:37.075][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:37.076][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.077][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:37.123][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:37.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:37.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:37.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:37.135][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:37.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:37.140][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.142][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.143][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.144][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.157][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:37.159][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:37.160][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.162][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:37.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:37.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.173][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:37.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.177][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:37.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:37.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:37.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.194][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.206][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.210][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.212][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.222][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.224][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.225][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.226][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.239][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:37.240][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:37.242][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.243][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.245][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.255][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.257][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.258][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.260][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.271][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.272][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.274][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.275][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.286][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:37.288][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:37.289][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.290][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.292][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:37.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.301][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:37.303][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:37.304][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.305][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.307][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:37.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:37.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.322][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.334][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:37.360][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:37.361][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:37.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:37.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:37.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:37.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:37.385][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.388][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.389][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.400][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:37.402][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:37.403][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.404][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:37.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:37.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.415][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:37.417][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.419][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:37.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:37.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.430][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:37.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:37.433][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.435][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:37.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:37.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.446][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.447][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.449][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.450][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:37.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.463][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.464][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.465][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.467][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:37.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.476][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:37.478][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:37.479][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.480][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.482][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:37.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:37.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.491][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.494][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.495][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.507][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.508][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.510][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.511][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.522][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:37.523][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:37.525][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.526][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:37.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.537][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:37.539][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:37.540][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.541][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:37.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:37.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.570][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:37.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:37.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:37.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:37.647][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2023-02-02 01:58:37.649][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2023-02-02 01:58:37.650][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2023-02-02 01:58:37.666][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.668][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2023-02-02 01:58:37.669][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:37.670][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.700][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.702][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2023-02-02 01:58:37.703][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:37.704][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.714][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.716][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2023-02-02 01:58:37.717][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:37.718][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:37.722][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:37.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:37.730][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2023-02-02 01:58:37.732][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:37.735][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2023-02-02 01:58:37.755][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:37.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:37.758][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.760][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:37.761][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.762][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:37.764][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:37.765][ef$get] fields variable is a list.
biodb.INFO [2023-02-02 01:58:37.767][biodb::testThat]
biodb.INFO [2023-02-02 01:58:37.768][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2023-02-02 01:58:37.769][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:37.771][biodb::testThat]
biodb.ERROR[2023-02-02 01:58:37.790][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2023-02-02 01:58:37.819][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2023-02-02 01:58:37.833][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-02 01:58:37.834][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-02 01:58:37.836][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-02 01:58:37.837][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-02 01:58:37.838][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:37.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:37.841][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:37.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:37.844][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-02 01:58:37.859][biodb::testContext]
biodb.INFO [2023-02-02 01:58:37.860][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:37.862][biodb::testContext] Test context - Test conversions
biodb.INFO [2023-02-02 01:58:37.863][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:37.865][biodb::testContext]
biodb.INFO [2023-02-02 01:58:37.871][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:37.873][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:37.878][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:37.880][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-02 01:58:37.881][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.887][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-02 01:58:37.888][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.894][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-02 01:58:37.895][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.901][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-02 01:58:37.903][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-02 01:58:37.904][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-02 01:58:37.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.910][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-02 01:58:37.911][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-02 01:58:37.913][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.918][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-02 01:58:37.920][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-02 01:58:37.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.925][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-02 01:58:37.927][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-02 01:58:37.928][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-02 01:58:37.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.933][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-02 01:58:37.935][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.940][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-02 01:58:37.942][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-02 01:58:37.943][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-02 01:58:37.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.949][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:37.950][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-02 01:58:37.951][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-02 01:58:37.953][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-02 01:58:37.954][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-02 01:58:37.956][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-02 01:58:37.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.961][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-02 01:58:37.963][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-02 01:58:37.964][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.968][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-02 01:58:37.970][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-02 01:58:37.971][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.975][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-02 01:58:37.977][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-02 01:58:37.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.982][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-02 01:58:37.985][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-02 01:58:37.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.990][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-02 01:58:37.992][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-02 01:58:37.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:37.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:37.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:37.997][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:37.999][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-02 01:58:38.004][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-02 01:58:38.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.010][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-02 01:58:38.011][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-02 01:58:38.013][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-02 01:58:38.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.018][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-02 01:58:38.021][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.022][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-02 01:58:38.024][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.025][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:38.026][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.028][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.029][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.031][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.032][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:38.034][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:38.035][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.036][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-02 01:58:38.038][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:38.039][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.041][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.042][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:38.042][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:38.042][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:38.042][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:38.042][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:38.044][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:38.045][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.046][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.048][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:38.049][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.050][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.052][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.053][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.055][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:38.056][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:38.057][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.059][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.060][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-02 01:58:38.063][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.064][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:38.066][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.067][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:38.069][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.070][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.072][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.073][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.074][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:38.076][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:38.077][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.079][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-02 01:58:38.080][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:38.082][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.083][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.085][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:38.085][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:38.085][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:38.085][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:38.085][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:38.086][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:38.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.090][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:38.092][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.093][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.094][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.096][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.097][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:38.099][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:38.100][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.102][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.103][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-02 01:58:38.106][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.107][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-02 01:58:38.109][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.110][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:38.112][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.113][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.115][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.116][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.118][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:38.119][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:38.120][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.122][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-02 01:58:38.123][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:38.125][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.126][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.128][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.129][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:38.130][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.132][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.133][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:38.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.136][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.137][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.138][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.140][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:38.141][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:38.143][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.144][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.146][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-02 01:58:38.148][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.150][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:38.151][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.152][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:38.154][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.155][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.157][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.158][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.160][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:38.161][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:38.162][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.164][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-02 01:58:38.165][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:38.167][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.168][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.169][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.171][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:38.172][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.174][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.175][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:38.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.178][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.179][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.180][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.182][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:38.183][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:38.184][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.186][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:38.188][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:38.189][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.231][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.272][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.292][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.293][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.298][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.313][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-02 01:58:38.315][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-02 01:58:38.317][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-02 01:58:38.319][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-02 01:58:38.321][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:38.323][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-02 01:58:38.325][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:38.327][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:38.329][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-02 01:58:38.332][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-02 01:58:38.334][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:38.336][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-02 01:58:38.338][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:38.340][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:38.342][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-02 01:58:38.344][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-02 01:58:38.346][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-02 01:58:38.348][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-02 01:58:38.350][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:38.352][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-02 01:58:38.354][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-02 01:58:38.356][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-02 01:58:38.358][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-02 01:58:38.360][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-02 01:58:38.362][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-02 01:58:38.364][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-02 01:58:38.366][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-02 01:58:38.368][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-02 01:58:38.370][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-02 01:58:38.373][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-02 01:58:38.375][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-02 01:58:38.377][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-02 01:58:38.379][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-02 01:58:38.381][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-02 01:58:38.383][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-02 01:58:38.385][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-02 01:58:38.387][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-02 01:58:38.389][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-02 01:58:38.391][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-02 01:58:38.393][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-02 01:58:38.395][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-02 01:58:38.397][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-02 01:58:38.399][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-02 01:58:38.401][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-02 01:58:38.403][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-02 01:58:38.405][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-02 01:58:38.407][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-02 01:58:38.409][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-02 01:58:38.411][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-02 01:58:38.413][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-02 01:58:38.416][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-02 01:58:38.418][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-02 01:58:38.420][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-02 01:58:38.422][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-02 01:58:38.424][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-02 01:58:38.426][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-02 01:58:38.428][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-02 01:58:38.430][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-02 01:58:38.432][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-02 01:58:38.434][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-02 01:58:38.436][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-02 01:58:38.438][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-02 01:58:38.440][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-02 01:58:38.442][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-02 01:58:38.444][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-02 01:58:38.446][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-02 01:58:38.448][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:38.450][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:38.452][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-02 01:58:38.454][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-02 01:58:38.456][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-02 01:58:38.458][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-02 01:58:38.461][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-02 01:58:38.463][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-02 01:58:38.465][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-02 01:58:38.467][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-02 01:58:38.469][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-02 01:58:38.471][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-02 01:58:38.473][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-02 01:58:38.475][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-02 01:58:38.477][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-02 01:58:38.479][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-02 01:58:38.481][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-02 01:58:38.484][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-02 01:58:38.486][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:38.487][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:38.488][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.491][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.529][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.541][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.556][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.577][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:38.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.651][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:38.653][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-02 01:58:38.655][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.657][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.658][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.660][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:38.661][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.663][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.664][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.666][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-02 01:58:38.667][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-02 01:58:38.669][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:38.670][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.672][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-02 01:58:38.673][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-02 01:58:38.675][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-02 01:58:38.677][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:38.678][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:38.678][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:38.678][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:38.680][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-02 01:58:38.681][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.682][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.684][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:38.694][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:38.696][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:38.698][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:38.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-02 01:58:38.699][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-02 01:58:38.701][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:38.702][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:38.703][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:38.705][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-02 01:58:38.705][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-02 01:58:38.707][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:38.709][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:38.712][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-02 01:58:38.714][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:38.716][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:38.718][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:38.723][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-02 01:58:38.725][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-02 01:58:38.726][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-02 01:58:38.729][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-02 01:58:38.730][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:38.732][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:38.734][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-02 01:58:38.735][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-02 01:58:38.737][biodb::testThat]
biodb.INFO [2023-02-02 01:58:38.739][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2023-02-02 01:58:38.740][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:38.742][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:38.747][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-02 01:58:38.752][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-02 01:58:38.756][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.758][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-02 01:58:38.763][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:38.768][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-02 01:58:38.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.787][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-02 01:58:38.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.791][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.807][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:38.812][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.814][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-02 01:58:38.816][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.828][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-02 01:58:38.831][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.896][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:38.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.902][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-02 01:58:38.904][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.906][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-02 01:58:38.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.918][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:38.929][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.930][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-02 01:58:38.932][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.934][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-02 01:58:38.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.946][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.949][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.953][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.965][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.970][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:38.975][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:38.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2023-02-02 01:58:38.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:38.980][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2023-02-02 01:58:38.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:38.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:38.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:38.993][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:38.994][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:38.995][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:38.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:38.999][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:39.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:39.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2023-02-02 01:58:39.007][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:39.009][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2023-02-02 01:58:39.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:39.012][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.027][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:39.032][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:39.034][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2023-02-02 01:58:39.036][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:39.039][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2023-02-02 01:58:39.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:39.043][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-02 01:58:39.060][biodb::testThat]
biodb.INFO [2023-02-02 01:58:39.061][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2023-02-02 01:58:39.064][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:39.065][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:39.070][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:39.075][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:39.077][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2023-02-02 01:58:39.079][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:39.095][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2023-02-02 01:58:39.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:39.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.108][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.127][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:39.137][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:39.139][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2023-02-02 01:58:39.141][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:39.160][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2023-02-02 01:58:39.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:39.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-02 01:58:39.197][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-02 01:58:39.198][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-02 01:58:39.200][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-02 01:58:39.201][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-02 01:58:39.202][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.205][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.224][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-02 01:58:39.230][biodb::testContext]
biodb.INFO [2023-02-02 01:58:39.232][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:39.233][biodb::testContext] Test context - Test web services
biodb.INFO [2023-02-02 01:58:39.234][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:39.236][biodb::testContext]
biodb.INFO [2023-02-02 01:58:39.259][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:39.261][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:39.265][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:39.292][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-02 01:58:39.294][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.299][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-02 01:58:39.300][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.321][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-02 01:58:39.323][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.328][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-02 01:58:39.329][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-02 01:58:39.331][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-02 01:58:39.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.335][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-02 01:58:39.337][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-02 01:58:39.338][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.343][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-02 01:58:39.344][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-02 01:58:39.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.349][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-02 01:58:39.350][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-02 01:58:39.352][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-02 01:58:39.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.357][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-02 01:58:39.358][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.364][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-02 01:58:39.366][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-02 01:58:39.367][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-02 01:58:39.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.372][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:39.373][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-02 01:58:39.375][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-02 01:58:39.376][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-02 01:58:39.377][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-02 01:58:39.379][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-02 01:58:39.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.384][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-02 01:58:39.385][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-02 01:58:39.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.390][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-02 01:58:39.391][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-02 01:58:39.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.396][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-02 01:58:39.398][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-02 01:58:39.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.404][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-02 01:58:39.406][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-02 01:58:39.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.411][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-02 01:58:39.412][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-02 01:58:39.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.417][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:39.419][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-02 01:58:39.424][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-02 01:58:39.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.430][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-02 01:58:39.432][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-02 01:58:39.433][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-02 01:58:39.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.438][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-02 01:58:39.440][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.442][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-02 01:58:39.443][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.444][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:39.446][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.447][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.448][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.450][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.451][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:39.452][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:39.454][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.455][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-02 01:58:39.456][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:39.458][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.459][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.460][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:39.460][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:39.460][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:39.460][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:39.460][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:39.462][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:39.463][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.464][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.466][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:39.467][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.468][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.470][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.471][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.472][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:39.473][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:39.475][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.476][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.478][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-02 01:58:39.480][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.482][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:39.483][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.484][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:39.486][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.487][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.488][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.490][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.491][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:39.492][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:39.494][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.495][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-02 01:58:39.497][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:39.498][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.501][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:39.501][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:39.501][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:39.501][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:39.501][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:39.502][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:39.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.506][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:39.507][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.508][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.510][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.511][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.512][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:39.514][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:39.515][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.516][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.518][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-02 01:58:39.520][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.522][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-02 01:58:39.523][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.525][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:39.526][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.527][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.529][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.530][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.531][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:39.533][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:39.534][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.535][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-02 01:58:39.537][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:39.538][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.540][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.541][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.542][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:39.544][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.545][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.546][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:39.547][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.549][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.550][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.551][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.553][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:39.554][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:39.555][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.557][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.558][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-02 01:58:39.561][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.562][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:39.563][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.565][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:39.566][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.567][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.569][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.570][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.571][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:39.573][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:39.574][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.575][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-02 01:58:39.577][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:39.578][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.580][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:39.581][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.582][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:39.584][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.585][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.586][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:39.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:39.589][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:39.590][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:39.591][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.593][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:39.594][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:39.595][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:39.596][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:39.598][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:39.599][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.602][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.629][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.708][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-02 01:58:39.710][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-02 01:58:39.712][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-02 01:58:39.722][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-02 01:58:39.724][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:39.725][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-02 01:58:39.727][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:39.729][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:39.731][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-02 01:58:39.733][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-02 01:58:39.735][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:39.737][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-02 01:58:39.739][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:39.741][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:39.742][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-02 01:58:39.744][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-02 01:58:39.746][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-02 01:58:39.748][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-02 01:58:39.750][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:39.752][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-02 01:58:39.754][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-02 01:58:39.756][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-02 01:58:39.758][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-02 01:58:39.760][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-02 01:58:39.762][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-02 01:58:39.763][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-02 01:58:39.765][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-02 01:58:39.767][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-02 01:58:39.769][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-02 01:58:39.771][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-02 01:58:39.773][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-02 01:58:39.775][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-02 01:58:39.777][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-02 01:58:39.779][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-02 01:58:39.781][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-02 01:58:39.783][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-02 01:58:39.785][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-02 01:58:39.787][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-02 01:58:39.789][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-02 01:58:39.791][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-02 01:58:39.793][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-02 01:58:39.796][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-02 01:58:39.798][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-02 01:58:39.800][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-02 01:58:39.802][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-02 01:58:39.804][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-02 01:58:39.805][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-02 01:58:39.808][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-02 01:58:39.809][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-02 01:58:39.811][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-02 01:58:39.813][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-02 01:58:39.815][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-02 01:58:39.817][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-02 01:58:39.819][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-02 01:58:39.821][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-02 01:58:39.823][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-02 01:58:39.825][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-02 01:58:39.827][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-02 01:58:39.829][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-02 01:58:39.831][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-02 01:58:39.833][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-02 01:58:39.835][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-02 01:58:39.837][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-02 01:58:39.839][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-02 01:58:39.841][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-02 01:58:39.843][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-02 01:58:39.845][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:39.847][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:39.848][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-02 01:58:39.850][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-02 01:58:39.852][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-02 01:58:39.854][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-02 01:58:39.856][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-02 01:58:39.858][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-02 01:58:39.860][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-02 01:58:39.862][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-02 01:58:39.864][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-02 01:58:39.866][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-02 01:58:39.868][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-02 01:58:39.870][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-02 01:58:39.872][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-02 01:58:39.874][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-02 01:58:39.876][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-02 01:58:39.878][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-02 01:58:39.880][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:39.882][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:39.883][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.885][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.908][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.945][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.949][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.957][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.984][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.989][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:39.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:39.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:39.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:39.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:39.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:39.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:39.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.001][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.010][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.037][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:40.039][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-02 01:58:40.042][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.043][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.045][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.046][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.048][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.049][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.050][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.052][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-02 01:58:40.053][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-02 01:58:40.055][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.056][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.058][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-02 01:58:40.059][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-02 01:58:40.061][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-02 01:58:40.062][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.064][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:40.064][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:40.064][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:40.065][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-02 01:58:40.067][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.068][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.069][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:40.071][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.072][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.073][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.075][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-02 01:58:40.075][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-02 01:58:40.076][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:40.078][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:40.081][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.082][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-02 01:58:40.082][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-02 01:58:40.084][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:40.087][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:40.089][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-02 01:58:40.091][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:40.093][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:40.095][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:40.100][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-02 01:58:40.101][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-02 01:58:40.103][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-02 01:58:40.105][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-02 01:58:40.107][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:40.108][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:40.110][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-02 01:58:40.111][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-02 01:58:40.113][biodb::testThat]
biodb.INFO [2023-02-02 01:58:40.114][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2023-02-02 01:58:40.116][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:40.117][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:40.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-02 01:58:40.134][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:40.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-02 01:58:40.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:40.140][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-02 01:58:40.145][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:40.150][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:40.152][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-02-02 01:58:40.153][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:40.171][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2023-02-02 01:58:40.177][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-02 01:58:40.178][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-02 01:58:40.180][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-02 01:58:40.181][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-02 01:58:40.182][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.184][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.203][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2023-02-02 01:58:40.209][biodb::testContext]
biodb.INFO [2023-02-02 01:58:40.211][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:40.212][biodb::testContext] Test context - Non regression tests
biodb.INFO [2023-02-02 01:58:40.213][biodb::testContext] ********************************************************************************
biodb.INFO [2023-02-02 01:58:40.215][biodb::testContext]
biodb.INFO [2023-02-02 01:58:40.225][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:40.227][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:40.232][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:40.233][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2023-02-02 01:58:40.235][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.236][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.238][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.240][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2023-02-02 01:58:40.241][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.246][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2023-02-02 01:58:40.248][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.252][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2023-02-02 01:58:40.254][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2023-02-02 01:58:40.255][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2023-02-02 01:58:40.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.260][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2023-02-02 01:58:40.262][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2023-02-02 01:58:40.263][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.268][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2023-02-02 01:58:40.269][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2023-02-02 01:58:40.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.274][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2023-02-02 01:58:40.276][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2023-02-02 01:58:40.277][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2023-02-02 01:58:40.278][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.282][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2023-02-02 01:58:40.283][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.288][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2023-02-02 01:58:40.290][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2023-02-02 01:58:40.291][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2023-02-02 01:58:40.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.296][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:40.298][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2023-02-02 01:58:40.299][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2023-02-02 01:58:40.300][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2023-02-02 01:58:40.302][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2023-02-02 01:58:40.303][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2023-02-02 01:58:40.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.308][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2023-02-02 01:58:40.310][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2023-02-02 01:58:40.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.313][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.314][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2023-02-02 01:58:40.316][self$set] Set key entries.sep to "|".
biodb.DEBUG[2023-02-02 01:58:40.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.321][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2023-02-02 01:58:40.322][self$set] Set key offline to FALSE.
biodb.DEBUG[2023-02-02 01:58:40.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.327][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2023-02-02 01:58:40.329][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2023-02-02 01:58:40.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.334][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2023-02-02 01:58:40.335][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2023-02-02 01:58:40.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.340][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2023-02-02 01:58:40.341][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2023-02-02 01:58:40.349][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2023-02-02 01:58:40.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.355][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2023-02-02 01:58:40.356][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2023-02-02 01:58:40.358][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2023-02-02 01:58:40.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.363][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2023-02-02 01:58:40.365][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.367][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2023-02-02 01:58:40.368][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.370][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.371][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.372][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.374][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.375][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.377][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:40.378][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.379][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.381][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2023-02-02 01:58:40.382][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:40.384][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.385][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.386][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:40.386][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:40.386][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:40.386][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:40.386][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:40.388][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:40.389][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.390][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:40.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.397][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.398][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:40.400][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:40.401][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.402][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.404][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2023-02-02 01:58:40.406][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.408][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:40.409][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.411][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.412][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.413][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.415][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.416][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.418][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:40.419][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.420][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.422][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2023-02-02 01:58:40.423][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:40.425][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.426][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.427][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:40.427][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:40.427][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:40.427][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2023-02-02 01:58:40.427][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2023-02-02 01:58:40.429][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:40.430][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.431][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.433][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:40.434][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.435][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.437][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.438][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.439][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:40.441][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:40.442][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.443][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.445][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2023-02-02 01:58:40.447][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.449][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2023-02-02 01:58:40.450][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.452][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.453][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.454][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.456][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.457][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.459][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2023-02-02 01:58:40.460][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.462][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.463][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2023-02-02 01:58:40.464][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:40.466][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.467][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.469][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.470][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:40.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.473][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.474][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:40.475][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.477][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.478][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.479][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.481][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:40.482][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:40.483][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.484][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.486][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2023-02-02 01:58:40.488][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.490][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2023-02-02 01:58:40.491][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.493][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.494][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.495][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.497][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.498][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.499][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2023-02-02 01:58:40.501][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.502][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.504][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2023-02-02 01:58:40.505][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:40.506][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.508][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.509][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.510][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2023-02-02 01:58:40.512][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:40.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:40.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:40.518][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.520][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.521][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:40.522][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:40.524][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.525][self$setPropertyValue]
biodb.DEBUG[2023-02-02 01:58:40.527][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:40.528][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.530][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.549][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.555][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.608][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.643][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2023-02-02 01:58:40.645][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2023-02-02 01:58:40.647][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2023-02-02 01:58:40.649][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2023-02-02 01:58:40.651][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:40.653][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2023-02-02 01:58:40.655][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:40.657][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:40.658][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2023-02-02 01:58:40.660][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2023-02-02 01:58:40.662][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:40.664][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2023-02-02 01:58:40.666][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2023-02-02 01:58:40.668][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2023-02-02 01:58:40.670][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2023-02-02 01:58:40.672][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2023-02-02 01:58:40.674][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2023-02-02 01:58:40.676][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2023-02-02 01:58:40.678][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:40.679][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2023-02-02 01:58:40.681][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2023-02-02 01:58:40.683][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2023-02-02 01:58:40.685][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2023-02-02 01:58:40.687][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2023-02-02 01:58:40.689][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2023-02-02 01:58:40.691][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2023-02-02 01:58:40.693][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2023-02-02 01:58:40.695][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2023-02-02 01:58:40.697][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2023-02-02 01:58:40.699][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2023-02-02 01:58:40.701][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2023-02-02 01:58:40.703][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2023-02-02 01:58:40.705][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2023-02-02 01:58:40.706][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2023-02-02 01:58:40.708][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2023-02-02 01:58:40.710][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2023-02-02 01:58:40.712][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2023-02-02 01:58:40.714][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2023-02-02 01:58:40.716][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2023-02-02 01:58:40.718][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2023-02-02 01:58:40.720][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2023-02-02 01:58:40.722][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2023-02-02 01:58:40.724][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2023-02-02 01:58:40.726][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2023-02-02 01:58:40.728][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2023-02-02 01:58:40.730][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2023-02-02 01:58:40.732][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2023-02-02 01:58:40.734][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2023-02-02 01:58:40.736][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2023-02-02 01:58:40.738][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2023-02-02 01:58:40.740][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2023-02-02 01:58:40.741][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2023-02-02 01:58:40.743][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2023-02-02 01:58:40.745][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2023-02-02 01:58:40.747][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2023-02-02 01:58:40.749][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2023-02-02 01:58:40.751][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2023-02-02 01:58:40.753][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2023-02-02 01:58:40.755][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2023-02-02 01:58:40.757][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2023-02-02 01:58:40.759][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2023-02-02 01:58:40.761][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2023-02-02 01:58:40.763][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2023-02-02 01:58:40.765][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2023-02-02 01:58:40.767][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2023-02-02 01:58:40.769][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2023-02-02 01:58:40.771][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:40.773][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:40.774][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2023-02-02 01:58:40.776][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2023-02-02 01:58:40.778][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2023-02-02 01:58:40.780][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2023-02-02 01:58:40.782][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2023-02-02 01:58:40.784][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2023-02-02 01:58:40.786][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2023-02-02 01:58:40.788][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2023-02-02 01:58:40.790][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2023-02-02 01:58:40.792][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2023-02-02 01:58:40.794][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2023-02-02 01:58:40.796][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2023-02-02 01:58:40.798][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2023-02-02 01:58:40.800][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2023-02-02 01:58:40.802][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2023-02-02 01:58:40.804][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2023-02-02 01:58:40.806][initialize] This is biodb version 1.7.0.
biodb.DEBUG[2023-02-02 01:58:40.807][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2023-02-02 01:58:40.809][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.811][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.813][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.831][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.848][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.877][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.887][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.894][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.929][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2023-02-02 01:58:40.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:40.955][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:40.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:40.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:40.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:40.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2023-02-02 01:58:40.962][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.17-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2023-02-02 01:58:40.964][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2023-02-02 01:58:40.966][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:40.968][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.969][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.970][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2023-02-02 01:58:40.972][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.973][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2023-02-02 01:58:40.974][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.976][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2023-02-02 01:58:40.977][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2023-02-02 01:58:40.978][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2023-02-02 01:58:40.980][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:40.981][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2023-02-02 01:58:40.983][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2023-02-02 01:58:41.002][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2023-02-02 01:58:41.004][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2023-02-02 01:58:41.005][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2023-02-02 01:58:41.005][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2023-02-02 01:58:41.005][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2023-02-02 01:58:41.007][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2023-02-02 01:58:41.008][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:41.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:41.011][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2023-02-02 01:58:41.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2023-02-02 01:58:41.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2023-02-02 01:58:41.016][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2023-02-02 01:58:41.017][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2023-02-02 01:58:41.017][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2023-02-02 01:58:41.018][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2023-02-02 01:58:41.020][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2023-02-02 01:58:41.021][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2023-02-02 01:58:41.022][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2023-02-02 01:58:41.022][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2023-02-02 01:58:41.024][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2023-02-02 01:58:41.026][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2023-02-02 01:58:41.029][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2023-02-02 01:58:41.030][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2023-02-02 01:58:41.033][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2023-02-02 01:58:41.035][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2023-02-02 01:58:41.039][super$initialize] Initialize connector chebi.
biodb.DEBUG[2023-02-02 01:58:41.041][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2023-02-02 01:58:41.042][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2023-02-02 01:58:41.044][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2023-02-02 01:58:41.046][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:41.047][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2023-02-02 01:58:41.049][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2023-02-02 01:58:41.051][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2023-02-02 01:58:41.052][biodb::testThat]
biodb.INFO [2023-02-02 01:58:41.054][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2023-02-02 01:58:41.055][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2023-02-02 01:58:41.056][biodb::testThat]
biodb.DEBUG[2023-02-02 01:58:41.061][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2023-02-02 01:58:41.065][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:41.067][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2023-02-02 01:58:41.069][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:41.071][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2023-02-02 01:58:41.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2023-02-02 01:58:41.080][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2023-02-02 01:58:41.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2023-02-02 01:58:41.083][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:41.085][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2023-02-02 01:58:41.089][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2023-02-02 01:58:41.091][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2023-02-02 01:58:41.093][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2023-02-02 01:58:41.095][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2023-02-02 01:58:41.098][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2023-02-02 01:58:41.100][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2023-02-02 01:58:41.120][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2023-02-02 01:58:41.122][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2023-02-02 01:58:41.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2023-02-02 01:58:41.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:41.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:41.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:41.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:41.137][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:41.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2023-02-02 01:58:41.143][ef$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.144][ef$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.146][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.147][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.158][ef$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:41.160][ef$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:41.161][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.162][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2023-02-02 01:58:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2023-02-02 01:58:41.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.173][ef$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:41.175][ef$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:41.176][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.178][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2023-02-02 01:58:41.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2023-02-02 01:58:41.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.190][ef$get] Asked field names are: inchi.
biodb.TRACE[2023-02-02 01:58:41.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2023-02-02 01:58:41.193][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.194][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.196][ef$get] Asked field names are: inchikey.
biodb.TRACE[2023-02-02 01:58:41.198][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2023-02-02 01:58:41.199][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.201][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.203][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:41.204][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.207][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.209][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:41.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2023-02-02 01:58:41.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.218][ef$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:41.220][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:41.221][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.223][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.225][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2023-02-02 01:58:41.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2023-02-02 01:58:41.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:41.236][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.238][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.240][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2023-02-02 01:58:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.250][ef$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:41.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:41.253][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.254][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2023-02-02 01:58:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2023-02-02 01:58:41.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:41.267][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:41.269][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.270][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.272][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2023-02-02 01:58:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2023-02-02 01:58:41.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.281][ef$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:41.283][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:41.284][ef$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.285][ef$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2023-02-02 01:58:41.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2023-02-02 01:58:41.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.314][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2023-02-02 01:58:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2023-02-02 01:58:41.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2023-02-02 01:58:41.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2023-02-02 01:58:41.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2023-02-02 01:58:41.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2023-02-02 01:58:41.357][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2023-02-02 01:58:41.359][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2023-02-02 01:58:41.360][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2023-02-02 01:58:41.362][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2023-02-02 01:58:41.363][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2023-02-02 01:58:41.364][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2023-02-02 01:58:41.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2023-02-02 01:58:41.367][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2023-02-02 01:58:41.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2023-02-02 01:58:41.369][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2023-02-02 01:58:41.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 340 ]
>
> proc.time()
user system elapsed
22.646 0.560 31.329
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 2.779 | 0.187 | 5.796 | |
| ChebiEntry | 0.501 | 0.004 | 0.512 | |