| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-03 02:35:55 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ensembldb package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ensembldb.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 605/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ensembldb 2.23.1 (landing page) Johannes Rainer
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: ensembldb |
| Version: 2.23.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb |
| StartedAt: 2023-02-01 15:50:59 -0000 (Wed, 01 Feb 2023) |
| EndedAt: 2023-02-01 15:53:03 -0000 (Wed, 01 Feb 2023) |
| EllapsedTime: 124.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ensembldb ### ############################################################################## ############################################################################## * checking for file ‘ensembldb/DESCRIPTION’ ... OK * preparing ‘ensembldb’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘MySQL-backend.Rmd’ using rmarkdown --- finished re-building ‘MySQL-backend.Rmd’ --- re-building ‘coordinate-mapping-use-cases.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/coordinate-mapping-use-cases_files/figure-html/olig-plot-1.png" but not available. The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/coordinate-mapping-use-cases_files/figure-html/sim2-plot-1.png" but not available. The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/coordinate-mapping-use-cases_files/figure-html/ex2-plot-1.png" but not available. --- finished re-building ‘coordinate-mapping-use-cases.Rmd’ --- re-building ‘coordinate-mapping.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/coordinate-mapping_files/figure-html/genomeToTranscript-ex1-plot-1.png" but not available. The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/coordinate-mapping_files/figure-html/proteinToGenome-SYP-plot-1.png" but not available. Quitting from lines 616-619 (coordinate-mapping.Rmd) Error: processing vignette 'coordinate-mapping.Rmd' failed with diagnostics: there is no package called 'BSgenome.Hsapiens.NCBI.GRCh38' --- failed re-building ‘coordinate-mapping.Rmd’ --- re-building ‘ensembldb.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpkTTezZ/Rbuild139a891c1f9260/ensembldb/vignettes/ensembldb_files/figure-html/granges-zbtb16-1.png" but not available. Quitting from lines 537-556 (ensembldb.Rmd) Error: processing vignette 'ensembldb.Rmd' failed with diagnostics: there is no package called 'BSgenome.Hsapiens.NCBI.GRCh38' --- failed re-building ‘ensembldb.Rmd’ --- re-building ‘proteins.Rmd’ using rmarkdown --- finished re-building ‘proteins.Rmd’ SUMMARY: processing the following files failed: ‘coordinate-mapping.Rmd’ ‘ensembldb.Rmd’ Error: Vignette re-building failed. Execution halted