Build/check report for BioC 3.17 - CHECK results for graper on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"	4039
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

Package: graper

Version: 1.15.0

Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings graper_1.15.0.tar.gz

StartedAt: 2023-02-02 09:06:24 -0000 (Thu, 02 Feb 2023)

EndedAt: 2023-02-02 09:08:19 -0000 (Thu, 02 Feb 2023)

EllapsedTime: 114.1 seconds

RetCode: 0

Status: OK

CheckDir: graper.Rcheck

Warnings: 0

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:graper.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings graper_1.15.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.15.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... OK
* used C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
* checking installed package size ... NOTE
  installed size is  6.1Mb
  sub-directories of 1Mb or more:
    libs   6.0Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘example_linear.Rmd’ using ‘UTF-8’... OK
  ‘example_logistic.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/graper.Rcheck/00check.log’
for details.

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++11
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG  -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/RcppArmadillo/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/BH/include' -I/usr/local/include    -fPIC  -g -O2  -Wall -c fit_graper.cpp -o fit_graper.o
In file included from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/arg.hpp:25,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/iterator/iterator_facade.hpp:13,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/range/iterator_range_core.hpp:27,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/lexical_cast.hpp:30,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/tools/convert_from_string.hpp:15,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/constants/constants.hpp:14,
                 from /home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/math/special_functions/digamma.hpp:20,
                 from graper_linear_dense_ff.h:2,
                 from fit_graper.cpp:4:
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/biocbuild/bbs-3.17-bioc/R/library/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
g++ -std=gnu++11 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o graper.so RcppExports.o fit_graper.o -llapack -L/home/biocbuild/bbs-3.17-bioc/R/lib -lRblas -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)


R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-882.357
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-566.093
ELB improved by 316.264

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-502.74
ELB improved by 63.3531

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.748
ELB improved by 35.9923

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.522
ELB improved by 15.2258

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.612
ELB improved by 6.90988

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.514
ELB improved by 4.09834

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.419
ELB improved by 3.09456

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.764
ELB improved by 2.65483

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.353
ELB improved by 2.41122

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.113
ELB improved by 2.24014

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.028
ELB improved by 2.08556

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.123
ELB improved by 1.90419

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-424.461
ELB improved by 1.66273

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.099
ELB improved by 1.36186

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.055
ELB improved by 1.04381

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-421.294
ELB improved by 0.760607

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.756
ELB improved by 0.538573

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.378
ELB improved by 0.377336

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.112
ELB improved by 0.266551

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.918
ELB improved by 0.19392

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.771
ELB improved by 0.147433

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.653
ELB improved by 0.117469

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.556
ELB improved by 0.0975133

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.472
ELB improved by 0.0835583

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.399
ELB improved by 0.0732347

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.334
ELB improved by 0.06516

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.275
ELB improved by 0.0585298

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.222
ELB improved by 0.0528796

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.174
ELB improved by 0.0479452

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.131
ELB improved by 0.0435779

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.091
ELB improved by 0.039692

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.055
ELB improved by 0.0362325

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.022
ELB improved by 0.033157

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.991
ELB improved by 0.0304265

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.963
ELB improved by 0.0280031

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.937
ELB improved by 0.0258498

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.913
ELB improved by 0.0239319

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.891
ELB improved by 0.022218

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.87
ELB improved by 0.0206802

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.851
ELB improved by 0.0192946

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.833
ELB improved by 0.0180408

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.816
ELB improved by 0.0169017

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.8
ELB improved by 0.0158628

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.785
ELB improved by 0.0149119

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.771
ELB improved by 0.014039

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.758
ELB improved by 0.0132352

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.746
ELB improved by 0.0124934

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.734
ELB improved by 0.0118072

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.723
ELB improved by 0.0111712

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.712
ELB improved by 0.0105807

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.702
ELB improved by 0.0100316

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.693
ELB improved by 0.0095204

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-886.028
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-567.368
ELB improved by 318.66

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-511.332
ELB improved by 56.0361

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-481.122
ELB improved by 30.2101

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-467.358
ELB improved by 13.7638

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-460.462
ELB improved by 6.89597

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.909
ELB improved by 4.55312

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.14
ELB improved by 3.76892

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.649
ELB improved by 3.49133

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.302
ELB improved by 3.34685

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.164
ELB improved by 3.1384

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.396
ELB improved by 2.76795

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.139
ELB improved by 2.2564

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.441
ELB improved by 1.69797

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.241
ELB improved by 1.19999

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.407
ELB improved by 0.834606

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.805
ELB improved by 0.602232

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.343
ELB improved by 0.461128

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.972
ELB improved by 0.371724

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.662
ELB improved by 0.31004

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.398
ELB improved by 0.26393

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.17
ELB improved by 0.227543

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.972
ELB improved by 0.197933

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.799
ELB improved by 0.173436

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.646
ELB improved by 0.152968

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.51
ELB improved by 0.135743

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.389
ELB improved by 0.121153

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.28
ELB improved by 0.108722

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.182
ELB improved by 0.0980699

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.093
ELB improved by 0.0888952

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.012
ELB improved by 0.0809565

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.938
ELB improved by 0.0740603

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.87
ELB improved by 0.0680511

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.807
ELB improved by 0.0628032

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.749
ELB improved by 0.0582153

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.695
ELB improved by 0.0542064

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.644
ELB improved by 0.0507119

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.597
ELB improved by 0.0476817

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.552
ELB improved by 0.0450781

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.509
ELB improved by 0.0428744

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.468
ELB improved by 0.0410536

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.428
ELB improved by 0.0396069

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.389
ELB improved by 0.0385325

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.352
ELB improved by 0.0378334

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.314
ELB improved by 0.0375146

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.277
ELB improved by 0.0375813

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.238
ELB improved by 0.0380375

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.2
ELB improved by 0.0388911

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.159
ELB improved by 0.0401678

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.117
ELB improved by 0.0419408

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.073
ELB improved by 0.0443765

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.025
ELB improved by 0.0477852

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.973
ELB improved by 0.0526354

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.913
ELB improved by 0.0594303

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.845
ELB improved by 0.068279

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.767
ELB improved by 0.0781042

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.681
ELB improved by 0.0861052

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.592
ELB improved by 0.0887987

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.507
ELB improved by 0.084461

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.433
ELB improved by 0.0742226

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.372
ELB improved by 0.0608436

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.325
ELB improved by 0.0471362

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.29
ELB improved by 0.0351062

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.265
ELB improved by 0.0256849

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.246
ELB improved by 0.0189066

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.231
ELB improved by 0.0143112

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.22
ELB improved by 0.0113057

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-428.211
ELB improved by 0.0093661

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-869.124
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-580.376
ELB improved by 288.748

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-520.268
ELB improved by 60.1082

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-479.799
ELB improved by 40.4692

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.737
ELB improved by 18.0617

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.426
ELB improved by 8.31051

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.709
ELB improved by 5.71753

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.595
ELB improved by 5.11364

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.505
ELB improved by 5.09061

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.428
ELB improved by 5.07648

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.668
ELB improved by 4.76042

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.619
ELB improved by 4.04887

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-420.51
ELB improved by 3.10921

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.287
ELB improved by 2.22236

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.732
ELB improved by 1.55547

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.617
ELB improved by 1.11476

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.784
ELB improved by 0.832734

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.142
ELB improved by 0.642549

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.638
ELB improved by 0.503594

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.24
ELB improved by 0.397868

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.923
ELB improved by 0.317569

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.666
ELB improved by 0.257207

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.454
ELB improved by 0.211835

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.276
ELB improved by 0.177338

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.126
ELB improved by 0.150618

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.996
ELB improved by 0.129475

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.884
ELB improved by 0.112399

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.786
ELB improved by 0.0983605

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.699
ELB improved by 0.0866484

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.622
ELB improved by 0.0767598

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.554
ELB improved by 0.0683287

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.493
ELB improved by 0.0610814

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.438
ELB improved by 0.0548078

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.389
ELB improved by 0.0493438

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.344
ELB improved by 0.0445593

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.304
ELB improved by 0.0403498

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.267
ELB improved by 0.0366305

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.234
ELB improved by 0.0333319

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.203
ELB improved by 0.0303967

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.176
ELB improved by 0.0277773

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.15
ELB improved by 0.0254336

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.127
ELB improved by 0.0233317

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.105
ELB improved by 0.0214429

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.086
ELB improved by 0.0197424

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.067
ELB improved by 0.0182088

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.051
ELB improved by 0.0168235

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.035
ELB improved by 0.0155702

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.021
ELB improved by 0.0144345

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.007
ELB improved by 0.013404

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.995
ELB improved by 0.0124674

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.983
ELB improved by 0.0116148

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.972
ELB improved by 0.0108376

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.962
ELB improved by 0.0101281

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.953
ELB improved by 0.00947918

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-870.317
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-565.71
ELB improved by 304.607

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-507.858
ELB improved by 57.8522

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-471.603
ELB improved by 36.2554

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.327
ELB improved by 17.2763

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.946
ELB improved by 7.38092

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.555
ELB improved by 4.39071

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.856
ELB improved by 3.69885

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.162
ELB improved by 3.6945

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.148
ELB improved by 4.01367

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-426.758
ELB improved by 4.39034

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.305
ELB improved by 4.45223

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-418.38
ELB improved by 3.92547

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.38
ELB improved by 2.99936

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.275
ELB improved by 2.10553

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.816
ELB improved by 1.45912

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.771
ELB improved by 1.04533

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.987
ELB improved by 0.783466

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.358
ELB improved by 0.628778

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.813
ELB improved by 0.545701

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.312
ELB improved by 0.500782

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.837
ELB improved by 0.474794

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.378
ELB improved by 0.459106

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.927
ELB improved by 0.450618

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.478
ELB improved by 0.449657

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.018
ELB improved by 0.45969

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.53
ELB improved by 0.487899

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.986
ELB improved by 0.543744

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.359
ELB improved by 0.627017

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.648
ELB improved by 0.711023

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.878
ELB improved by 0.77018

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.064
ELB improved by 0.814024

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.209
ELB improved by 0.855504

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.313
ELB improved by 0.895055

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.383
ELB improved by 0.930375

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.423
ELB improved by 0.96047

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.443
ELB improved by 0.979313

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.484
ELB improved by 0.959463

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.617
ELB improved by 0.866455

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.897
ELB improved by 0.720319

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-394.325
ELB improved by 0.572379

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.877
ELB improved by 0.447876

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.525
ELB improved by 0.352306

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-393.237
ELB improved by 0.287127

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.983
ELB improved by 0.254018

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.735
ELB improved by 0.248611

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.491
ELB improved by 0.243931

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.284
ELB improved by 0.207106

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.133
ELB improved by 0.150869

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.027
ELB improved by 0.10632

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.947
ELB improved by 0.0799736

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.881
ELB improved by 0.0654071

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.824
ELB improved by 0.0568316

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.773
ELB improved by 0.0510452

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.727
ELB improved by 0.0464287

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.685
ELB improved by 0.0421698

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.647
ELB improved by 0.0379015

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.613
ELB improved by 0.0335338

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.584
ELB improved by 0.029151

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.559
ELB improved by 0.0249268

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.538
ELB improved by 0.0210467

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.52
ELB improved by 0.0176478

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.506
ELB improved by 0.0147894

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.493
ELB improved by 0.0124576

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.483
ELB improved by 0.0105903

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-391.474
ELB improved by 0.00910546

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  2.919   0.100   3.007

name	user	system	elapsed
coef.graper	0.088	0.004	0.093
getPIPs	0.084	0.002	0.085
graper	0.130	0.004	0.134
makeExampleData	0.013	0.000	0.013
makeExampleDataWithUnequalGroups	0.012	0.004	0.016
plotELBO	0.284	0.012	0.296
plotGroupPenalties	1.116	0.028	1.145
plotPosterior	0.726	0.012	0.739
predict.graper	3.146	0.035	3.182
print.graper	0.080	0.004	0.084

CHECK results for graper on kunpeng1

Summary

Command output

Installation output

Tests output

Example timings