| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-03 02:36:07 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metabomxtr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabomxtr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1130/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metabomxtr 1.33.0 (landing page) Michael Nodzenski
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: metabomxtr |
| Version: 1.33.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:metabomxtr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings metabomxtr_1.33.0.tar.gz |
| StartedAt: 2023-02-02 12:01:48 -0000 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 12:04:40 -0000 (Thu, 02 Feb 2023) |
| EllapsedTime: 172.3 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: metabomxtr.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:metabomxtr.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings metabomxtr_1.33.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/metabomxtr.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘metabomxtr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘metabomxtr’ version ‘1.33.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘metabomxtr’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
mxtrmod 4.337 2.439 4.574
metabomxtr-package 4.525 1.891 4.303
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘Metabomxtr_Vignette.Rnw’... OK
‘mixnorm_Vignette.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
metabomxtr.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL metabomxtr ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘metabomxtr’ ... ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (metabomxtr)
metabomxtr.Rcheck/metabomxtr-Ex.timings
| name | user | system | elapsed | |
| addBatchMeans | 0.132 | 0.000 | 0.131 | |
| addOutlierInfo | 0.002 | 0.000 | 0.001 | |
| allMissingLevels | 0.003 | 0.000 | 0.004 | |
| anyMissingLevels | 0.000 | 0.002 | 0.002 | |
| idMissingLevels | 0.003 | 0.001 | 0.003 | |
| metabomxtr-package | 4.525 | 1.891 | 4.303 | |
| metabplot | 2.551 | 1.078 | 2.680 | |
| mixnorm | 1.858 | 1.490 | 1.458 | |
| mxtrmod | 4.337 | 2.439 | 4.574 | |
| mxtrmodLL | 0.005 | 0.000 | 0.005 | |
| mxtrmodLRT | 2.297 | 1.365 | 1.876 | |
| mxtrmodstart | 0.000 | 0.003 | 0.020 | |
| removeAllMissingCatVar | 0.000 | 0.003 | 0.004 | |
| removeMissingLevels | 0.004 | 0.000 | 0.004 | |
| runMxtrmod | 1.676 | 0.431 | 1.384 | |