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This page was generated on 2023-02-03 02:36:09 -0000 (Fri, 03 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4039
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for mirTarRnaSeq on kunpeng1


To the developers/maintainers of the mirTarRnaSeq package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/mirTarRnaSeq.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1211/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
mirTarRnaSeq 1.7.0  (landing page)
Mercedeh Movassagh
Snapshot Date: 2023-02-01 03:13:00 -0000 (Wed, 01 Feb 2023)
git_url: https://git.bioconductor.org/packages/mirTarRnaSeq
git_branch: master
git_last_commit: dfd043e
git_last_commit_date: 2022-11-01 15:24:32 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: mirTarRnaSeq
Version: 1.7.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz
StartedAt: 2023-02-02 13:07:49 -0000 (Thu, 02 Feb 2023)
EndedAt: 2023-02-02 13:14:06 -0000 (Thu, 02 Feb 2023)
EllapsedTime: 376.4 seconds
RetCode: 0
Status:   OK  
CheckDir: mirTarRnaSeq.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:mirTarRnaSeq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings mirTarRnaSeq_1.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘mirTarRnaSeq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mirTarRnaSeq’ version ‘1.7.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mirTarRnaSeq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘ggplot2’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘mirTarRnaSeq.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/mirTarRnaSeq.Rcheck/00check.log’
for details.



Installation output

mirTarRnaSeq.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL mirTarRnaSeq
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘mirTarRnaSeq’ ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mirTarRnaSeq)

Tests output


Example timings

mirTarRnaSeq.Rcheck/mirTarRnaSeq-Ex.timings

nameusersystemelapsed
combiner0.0080.0000.009
corMirnaRna0.1280.0080.135
corMirnaRnaMiranda0.2640.0120.292
downloadMirandaFile0.0000.0000.001
drawCorPlot000
drawInterPlots0.0280.0000.043
fdrSig0.7240.0000.770
finInterResult0.0020.0000.002
geneVari0.0000.0000.001
getInputSpecies0.3960.0160.426
glm_gaussian0.0010.0000.000
glm_multi0.0010.0000.000
glm_nb0.0010.0000.000
glm_poisson000
glm_zeroinfl0.0000.0000.001
glm_zeroinfl_negbin000
glm_zeroinfl_poisson000
importMirandaFile000
makeFormulaRightSide000
miRanComp0.040.000.04
miRandaIntersect0.0210.0000.021
mirRnaDensityCor0.040.000.04
mirRnaDensityInter000
mirRnaHeatmap0.9630.0041.091
mirRnaHeatmapDiff0.1160.0000.117
mirandaIntersectInter0.0180.0000.019
modelAIC0.0670.0000.067
modelCoefficients0.0000.0010.001
modelData000
modelModelName000
modelModelPvalue0.0010.0000.001
modelTermPvalues0.0020.0000.001
modelsFilter000
one2OneRnaMiRNA000
plotFit0.0170.0040.020
plotResiduals0.0090.0000.008
plotTerms0.0040.0000.004
runAllMirnaModels0.6600.0080.731
runModels0.6740.0040.736
sampCorRnaMirna1.1560.0161.306
threshSig000
threshSigInter0.0020.0000.002
twoTimePoint000
twoTimePointSamp000
tzTrans0.0070.0000.008