| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-03 02:36:11 -0000 (Fri, 03 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4039 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the multicrispr package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multicrispr.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1287/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| multicrispr 1.9.0 (landing page) Aditya Bhagwat
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: multicrispr |
| Version: 1.9.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data multicrispr |
| StartedAt: 2023-02-01 18:51:56 -0000 (Wed, 01 Feb 2023) |
| EndedAt: 2023-02-01 18:53:12 -0000 (Wed, 01 Feb 2023) |
| EllapsedTime: 76.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data multicrispr
###
##############################################################################
##############################################################################
* checking for file ‘multicrispr/DESCRIPTION’ ... OK
* preparing ‘multicrispr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘crispr_grna_design.Rmd’ using rmarkdown
Warning in for (i in seq_len(n)) { :
closing unused connection 4 (/tmp/RtmprJp3jq/Rinst170a2d460bfa1f/multicrispr/extdata/SRF.bed)
The magick package is required to crop "/tmp/RtmprJp3jq/Rbuild170a2d7a0d42fa/multicrispr/vignettes/crispr_grna_design_files/figure-html/unnamed-chunk-7-1.png" but not available.
The magick package is required to crop "/tmp/RtmprJp3jq/Rbuild170a2d7a0d42fa/multicrispr/vignettes/crispr_grna_design_files/figure-html/unnamed-chunk-8-1.png" but not available.
Quitting from lines 136-138 (crispr_grna_design.Rmd)
Error: processing vignette 'crispr_grna_design.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Mmusculus.UCSC.mm10'
--- failed re-building ‘crispr_grna_design.Rmd’
--- re-building ‘genome_arithmetics.Rmd’ using rmarkdown
Quitting from lines 27-35 (genome_arithmetics.Rmd)
Error: processing vignette 'genome_arithmetics.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘genome_arithmetics.Rmd’
--- re-building ‘prime_editing.Rmd’ using rmarkdown
Quitting from lines 112-117 (prime_editing.Rmd)
Error: processing vignette 'prime_editing.Rmd' failed with diagnostics:
there is no package called 'BSgenome.Hsapiens.UCSC.hg38'
--- failed re-building ‘prime_editing.Rmd’
SUMMARY: processing the following files failed:
‘crispr_grna_design.Rmd’ ‘genome_arithmetics.Rmd’ ‘prime_editing.Rmd’
Error: Vignette re-building failed.
Execution halted