This page was generated on 2023-02-03 02:36:22 -0000 (Fri, 03 Feb 2023).
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rtracklayer
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* checking for file ‘rtracklayer/DESCRIPTION’ ... OK
* preparing ‘rtracklayer’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘rtracklayer.Rnw’ using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: ‘BiocGenerics’
The following objects are masked from ‘package:stats’:
IQR, mad, sd, var, xtabs
The following objects are masked from ‘package:base’:
Filter, Find, Map, Position, Reduce, anyDuplicated, aperm,
append, as.data.frame, basename, cbind, colnames, dirname,
do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages
'citation("pkgname")'.
Loading required package: hgu133plus2.db
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: ‘S4Vectors’
The following objects are masked from ‘package:base’:
I, expand.grid, unname
Loading required package: org.Hs.eg.db
Attaching package: ‘limma’
The following object is masked from ‘package:BiocGenerics’:
plotMA
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Error: processing vignette 'rtracklayer.Rnw' failed with diagnostics:
chunk 38 (label = search-nrsf)
Error in library(BSgenome.Hsapiens.UCSC.hg19) :
there is no package called ‘BSgenome.Hsapiens.UCSC.hg19’
--- failed re-building ‘rtracklayer.Rnw’
SUMMARY: processing the following file failed:
‘rtracklayer.Rnw’
Error: Vignette re-building failed.
Execution halted