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This page was generated on 2023-02-03 02:36:31 -0000 (Fri, 03 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4039
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BUILD results for xcms on kunpeng1


To the developers/maintainers of the xcms package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/xcms.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 2149/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
xcms 3.21.0  (landing page)
Steffen Neumann
Snapshot Date: 2023-02-01 03:13:00 -0000 (Wed, 01 Feb 2023)
git_url: https://git.bioconductor.org/packages/xcms
git_branch: master
git_last_commit: 39f2900
git_last_commit_date: 2022-11-01 14:39:01 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: xcms
Version: 3.21.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
StartedAt: 2023-02-01 23:38:39 -0000 (Wed, 01 Feb 2023)
EndedAt: 2023-02-01 23:44:26 -0000 (Wed, 01 Feb 2023)
EllapsedTime: 347.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data xcms
###
##############################################################################
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* checking for file ‘xcms/DESCRIPTION’ ... OK
* preparing ‘xcms’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘LC-MS-feature-grouping.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/feature-rt-mz-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/feature-groups-rtime-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/feature-groups-rtime-plot2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/abundance-correlation-heatmap-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/abundance-correlation-fg040-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/example-1-eic-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/LC-MS-feature-grouping_files/figure-html/example-2-eic-1.png" but not available.
--- finished re-building ‘LC-MS-feature-grouping.Rmd’

--- re-building ‘xcms-direct-injection.Rmd’ using rmarkdown
Quitting from lines 57-72 (xcms-direct-injection.Rmd) 
Error: processing vignette 'xcms-direct-injection.Rmd' failed with diagnostics:
inherits(x, "mzR") is not TRUE
--- failed re-building ‘xcms-direct-injection.Rmd’

--- re-building ‘xcms-lcms-ms.Rmd’ using rmarkdown
Quitting from lines 76-81 (xcms-lcms-ms.Rmd) 
Error: processing vignette 'xcms-lcms-ms.Rmd' failed with diagnostics:
inherits(x, "mzR") is not TRUE
--- failed re-building ‘xcms-lcms-ms.Rmd’

--- re-building ‘xcms.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/data-inspection-bpc-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/data-inspection-tic-boxplot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/data-inspection-bpc-heatmap-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-plot-eic-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-plot-ms-data-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-eic-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-postprocessing-merged-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-postprocessing-not-merged-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-postprocessing-chr-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-chrom-peaks-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-chrom-peak-image-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-highlight-chrom-peaks-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-highlight-chrom-peaks-plot-polygon-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/peak-detection-chrom-peak-intensity-boxplot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/alignment-obiwarp-plot-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/alignment-peak-groups-example-peak-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/alignment-subset-plot-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/correspondence-example-slice-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/feature-eic-1.png" but not available.
The magick package is required to crop "/tmp/RtmpFDMyRJ/Rbuild1b6a9c41091096/xcms/vignettes/xcms_files/figure-html/final-pca-1.png" but not available.
--- finished re-building ‘xcms.Rmd’

SUMMARY: processing the following files failed:
  ‘xcms-direct-injection.Rmd’ ‘xcms-lcms-ms.Rmd’

Error: Vignette re-building failed.
Execution halted