| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:14:50 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the AnnotationHub package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/AnnotationHub.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 58/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| AnnotationHub 3.7.0 (landing page) Bioconductor Package Maintainer
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | TIMEOUT | |||||||||
| Package: AnnotationHub |
| Version: 3.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:AnnotationHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings AnnotationHub_3.7.0.tar.gz |
| StartedAt: 2023-02-06 17:20:29 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 18:00:29 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 2400.5 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: AnnotationHub.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:AnnotationHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings AnnotationHub_3.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/AnnotationHub.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘AnnotationHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AnnotationHub’ version ‘3.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AnnotationHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' imports not declared from:
‘CompoundDb’ ‘ensembldb’
Unexported objects imported by ':::' calls:
‘BiocFileCache:::.get_tbl_rid’ ‘S4Vectors:::selectSome’
See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
checkRd: (5) AnnotationHub-class.Rd:134-142: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:151-154: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:155-158: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:159-162: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:163-166: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:167-171: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:172-178: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:179-213: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:215-217: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:219-221: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:223-225: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:234-238: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:239-243: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:244-250: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:251-272: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:273-281: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:282-287: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:288-293: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:300-304: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:305-309: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:310-321: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:322-325: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:326-329: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:330-337: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:338-345: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:346-351: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:358-362: \item in \describe must have non-empty label
checkRd: (5) AnnotationHub-class.Rd:363-367: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...
AnnotationHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL AnnotationHub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘AnnotationHub’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AnnotationHub)
AnnotationHub.Rcheck/AnnotationHub-Ex.timings
| name | user | system | elapsed |