| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:14:51 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the Basic4Cseq package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Basic4Cseq.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 115/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Basic4Cseq 1.35.0 (landing page) Carolin Walter
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: Basic4Cseq |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings Basic4Cseq_1.35.0.tar.gz |
| StartedAt: 2023-02-06 18:16:05 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 18:21:14 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 308.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Basic4Cseq.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:Basic4Cseq.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings Basic4Cseq_1.35.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/Basic4Cseq.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘Basic4Cseq/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Basic4Cseq’ version ‘1.35.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Basic4Cseq’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
readsToFragments 5.765 1.447 7.214
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘vignette.Rnw’... OK
OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
Basic4Cseq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL Basic4Cseq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘Basic4Cseq’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Basic4Cseq)
Basic4Cseq.Rcheck/Basic4Cseq-Ex.timings
| name | user | system | elapsed | |
| Data4Cseq-class | 0.001 | 0.000 | 0.001 | |
| Data4Cseq | 0.108 | 0.004 | 0.116 | |
| checkRestrictionEnzymeSequence | 0 | 0 | 0 | |
| chooseNearCisFragments | 0.008 | 0.004 | 0.012 | |
| createVirtualFragmentLibrary | 0 | 0 | 0 | |
| drawDigestionFragmentHistogram | 0.003 | 0.003 | 0.006 | |
| drawHeatmap | 0 | 0 | 0 | |
| exportVisualizationFragmentData | 0 | 0 | 0 | |
| getReadDistribution | 0.198 | 0.052 | 0.250 | |
| giveEnzymeSequence | 0.002 | 0.000 | 0.003 | |
| importVisualizationFragmentData | 0.004 | 0.004 | 0.009 | |
| liverData | 0.003 | 0.000 | 0.004 | |
| liverDataRaw | 0.000 | 0.003 | 0.004 | |
| normalizeFragmentData | 0.003 | 0.004 | 0.007 | |
| plotTransInteractions | 0.001 | 0.000 | 0.000 | |
| prepare4CseqData | 0.001 | 0.000 | 0.000 | |
| printBEDFragmentLibrary | 0 | 0 | 0 | |
| printWigFile | 0 | 0 | 0 | |
| readPointsOfInterestFile | 0.003 | 0.000 | 0.002 | |
| readsToFragments | 5.765 | 1.447 | 7.214 | |
| simulateDigestion | 0.001 | 0.002 | 0.002 | |
| visualizeViewpoint | 0.045 | 0.002 | 0.047 | |