| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:14:52 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the BiocOncoTK package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocOncoTK.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 166/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocOncoTK 1.19.1 (landing page) VJ Carey
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | ERROR | skipped | |||||||||
| Package: BiocOncoTK |
| Version: 1.19.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK |
| StartedAt: 2023-02-06 05:25:45 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 05:27:47 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 122.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BiocOncoTK ### ############################################################################## ############################################################################## * checking for file ‘BiocOncoTK/DESCRIPTION’ ... OK * preparing ‘BiocOncoTK’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘BiocOncoTK.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpZIGVxN/Rbuild8203e79084066/BiocOncoTK/vignettes/BiocOncoTK_files/figure-html/lkgbm-1.png" but not available. The magick package is required to crop "/tmp/RtmpZIGVxN/Rbuild8203e79084066/BiocOncoTK/vignettes/BiocOncoTK_files/figure-html/dopogmock-1.png" but not available. Quitting from lines 690-695 (BiocOncoTK.Rmd) Error: processing vignette 'BiocOncoTK.Rmd' failed with diagnostics: 'dimnames' applied to non-array --- failed re-building ‘BiocOncoTK.Rmd’ --- re-building ‘curatedMSIData.Rmd’ using rmarkdown The magick package is required to crop "/tmp/RtmpZIGVxN/Rbuild8203e79084066/BiocOncoTK/vignettes/curatedMSIData_files/figure-html/make2a-1.png" but not available. The magick package is required to crop "/tmp/RtmpZIGVxN/Rbuild8203e79084066/BiocOncoTK/vignettes/curatedMSIData_files/figure-html/make3a-1.png" but not available. The magick package is required to crop "/tmp/RtmpZIGVxN/Rbuild8203e79084066/BiocOncoTK/vignettes/curatedMSIData_files/figure-html/getms-1.png" but not available. --- finished re-building ‘curatedMSIData.Rmd’ --- re-building ‘maptcga.Rmd’ using rmarkdown --- finished re-building ‘maptcga.Rmd’ SUMMARY: processing the following file failed: ‘BiocOncoTK.Rmd’ Error: Vignette re-building failed. Execution halted