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This page was generated on 2023-02-08 01:14:54 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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BUILD results for CATALYST on kunpeng1


To the developers/maintainers of the CATALYST package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CATALYST.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
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raw results

Package 253/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CATALYST 1.23.2  (landing page)
Helena L. Crowell
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/CATALYST
git_branch: master
git_last_commit: c32427a
git_last_commit_date: 2023-01-31 18:11:45 -0000 (Tue, 31 Jan 2023)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: CATALYST
Version: 1.23.2
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CATALYST
StartedAt: 2023-02-06 05:58:19 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 06:02:33 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 253.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CATALYST
###
##############################################################################
##############################################################################


* checking for file ‘CATALYST/DESCRIPTION’ ... OK
* preparing ‘CATALYST’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘differential.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/delta-area-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotCounts-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotCounts-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/pbMDS-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/pbMDS-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/clrDR-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/clrDR-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotExprHeatmap-sample-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotExprHeatmap-cluster-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotExprHeatmap-both-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMedExprs-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMedExprs-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMedExprs-3-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMedExprs-4-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotClusterExprs-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotAbundances-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotAbundances-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotFreqHeatmap-complete-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotFreqHeatmap-minimal-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMultiHeatmap-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMultiHeatmap-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMultiHeatmap-3-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDR-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDR-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/filterSCE-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDiffHeatmap-da-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDiffHeatmap-ds-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDiffHeatmap-filter-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDiffHeatmap-filter-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotDiffHeatmap-pals-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMedExprs-custom-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotMultiHeatmap-custom-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotExprHeatmap-minimal-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/plotExprHeatmap-complete-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/combine-heatmaps-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/differential_files/figure-html/combine-heatmaps-2-1.png" but not available.
--- finished re-building ‘differential.Rmd’

--- re-building ‘preprocessing.Rmd’ using rmarkdown
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/normCytof-scatter-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/normCytof-lines-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotYields-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotYields-2.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotEvents-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotEvents-2.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotMahal-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotSpillmat-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/compCytof-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-1-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-2-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-3-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-3-2.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-4-1.png" but not available.
The magick package is required to crop "/tmp/RtmpqjjKey/Rbuildf37111e88c185/CATALYST/vignettes/preprocessing_files/figure-html/plotScatter-5-1.png" but not available.
Quitting from lines 518-547 (preprocessing.Rmd) 
Error: processing vignette 'preprocessing.Rmd' failed with diagnostics:
there is no package called 'openCyto'
--- failed re-building ‘preprocessing.Rmd’

SUMMARY: processing the following file failed:
  ‘preprocessing.Rmd’

Error: Vignette re-building failed.
Execution halted