| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-08 01:14:59 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the DeepBlueR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeepBlueR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 486/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeepBlueR 1.25.1 (landing page) Felipe Albrecht
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | ERROR | |||||||||
| Package: DeepBlueR |
| Version: 1.25.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings DeepBlueR_1.25.1.tar.gz |
| StartedAt: 2023-02-06 23:12:55 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 23:26:09 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 794.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: DeepBlueR.Rcheck |
| Warnings: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:DeepBlueR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings DeepBlueR_1.25.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/DeepBlueR.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘DeepBlueR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘DeepBlueR’ version ‘1.25.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DeepBlueR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
Cannot process chunk/lines:
v0.99.0 Initial Bioconductor submission
Cannot process chunk/lines:
v1.0.0 Bioconductor 3.4 release
Cannot process chunk/lines:
v1.2.0 Bioconductor 3.5 release
Cannot process chunk/lines:
v1.4.0 Bioconductor 3.6 release
Cannot process chunk/lines:
v1.4.1 Bugfixes following changes in the DeepBlue API
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: deepblue_enrich_regions_fast.Rd:35-38: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
deepblue_enrich_regions_overlap 0.621 0.068 6.536
deepblue_liftover 0.462 0.020 15.091
deepblue_batch_export_results 0.308 0.036 5.601
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘DeepBlueR.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... ERROR
Error(s) in re-building vignettes:
--- re-building ‘DeepBlueR.Rmd’ using rmarkdown
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820591&key=anonymous_key'
Content type 'application/x-bzip2' length 45606 bytes (44 KB)
==================================================
downloaded 44 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726035&key=anonymous_key'
Content type 'application/x-bzip2' length 1394381 bytes (1.3 MB)
==================================================
downloaded 1.3 MB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820593&key=anonymous_key'
Content type 'application/x-bzip2' length 2618 bytes
==================================================
downloaded 2618 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820594&key=anonymous_key'
Content type 'application/x-bzip2' length 8189 bytes
==================================================
downloaded 8189 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726036&key=anonymous_key'
Content type 'application/x-bzip2' length 21187 bytes (20 KB)
==================================================
downloaded 20 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726037&key=anonymous_key'
Content type 'application/x-bzip2' length 171602 bytes (167 KB)
==================================================
downloaded 167 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726038&key=anonymous_key'
Content type 'application/x-bzip2' length 7420781 bytes (7.1 MB)
==================================================
downloaded 7.1 MB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726039&key=anonymous_key'
Content type 'application/x-bzip2' length 14872 bytes (14 KB)
==================================================
downloaded 14 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726040&key=anonymous_key'
Content type 'application/x-bzip2' length 2048 bytes
==================================================
downloaded 2048 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726042&key=anonymous_key'
Content type 'application/x-bzip2' length 18557 bytes (18 KB)
==================================================
downloaded 18 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726043&key=anonymous_key'
Content type 'application/x-bzip2' length 271 bytes
==================================================
downloaded 271 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r3726044&key=anonymous_key'
Content type 'application/x-bzip2' length 32905 bytes (32 KB)
==================================================
downloaded 32 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820603&key=anonymous_key'
Content type 'application/x-bzip2' length 1776 bytes
==================================================
downloaded 1776 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820604&key=anonymous_key'
Content type 'application/x-bzip2' length 12681 bytes (12 KB)
==================================================
downloaded 12 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820605&key=anonymous_key'
Content type 'application/x-bzip2' length 8617 bytes
==================================================
downloaded 8617 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820606&key=anonymous_key'
Content type 'application/x-bzip2' length 8502 bytes
==================================================
downloaded 8502 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820607&key=anonymous_key'
Content type 'application/x-bzip2' length 7612 bytes
==================================================
downloaded 7612 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820608&key=anonymous_key'
Content type 'application/x-bzip2' length 7791 bytes
==================================================
downloaded 7791 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820609&key=anonymous_key'
Content type 'application/x-bzip2' length 7772 bytes
==================================================
downloaded 7772 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820610&key=anonymous_key'
Content type 'application/x-bzip2' length 6613 bytes
==================================================
downloaded 6613 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820611&key=anonymous_key'
Content type 'application/x-bzip2' length 6189 bytes
==================================================
downloaded 6189 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820612&key=anonymous_key'
Content type 'application/x-bzip2' length 6516 bytes
==================================================
downloaded 6516 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820613&key=anonymous_key'
Content type 'application/x-bzip2' length 5784 bytes
==================================================
downloaded 5784 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820614&key=anonymous_key'
Content type 'application/x-bzip2' length 4324 bytes
==================================================
downloaded 4324 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820615&key=anonymous_key'
Content type 'application/x-bzip2' length 113 bytes
==================================================
downloaded 113 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820616&key=anonymous_key'
Content type 'application/x-bzip2' length 121 bytes
==================================================
downloaded 121 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820617&key=anonymous_key'
Content type 'application/x-bzip2' length 113 bytes
==================================================
downloaded 113 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820618&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820619&key=anonymous_key'
Content type 'application/x-bzip2' length 121 bytes
==================================================
downloaded 121 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820620&key=anonymous_key'
Content type 'application/x-bzip2' length 12450 bytes (12 KB)
==================================================
downloaded 12 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820621&key=anonymous_key'
Content type 'application/x-bzip2' length 10112 bytes
==================================================
downloaded 10112 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820622&key=anonymous_key'
Content type 'application/x-bzip2' length 10467 bytes (10 KB)
==================================================
downloaded 10 KB
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820623&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820624&key=anonymous_key'
Content type 'application/x-bzip2' length 125 bytes
==================================================
downloaded 125 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820625&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820626&key=anonymous_key'
Content type 'application/x-bzip2' length 122 bytes
==================================================
downloaded 122 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820627&key=anonymous_key'
Content type 'application/x-bzip2' length 112 bytes
==================================================
downloaded 112 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820628&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820629&key=anonymous_key'
Content type 'application/x-bzip2' length 10165 bytes
==================================================
downloaded 10165 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820630&key=anonymous_key'
Content type 'application/x-bzip2' length 112 bytes
==================================================
downloaded 112 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820631&key=anonymous_key'
Content type 'application/x-bzip2' length 112 bytes
==================================================
downloaded 112 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820632&key=anonymous_key'
Content type 'application/x-bzip2' length 121 bytes
==================================================
downloaded 121 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820633&key=anonymous_key'
Content type 'application/x-bzip2' length 112 bytes
==================================================
downloaded 112 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820634&key=anonymous_key'
Content type 'application/x-bzip2' length 169 bytes
==================================================
downloaded 169 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820635&key=anonymous_key'
Content type 'application/x-bzip2' length 9849 bytes
==================================================
downloaded 9849 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820636&key=anonymous_key'
Content type 'application/x-bzip2' length 9703 bytes
==================================================
downloaded 9703 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820637&key=anonymous_key'
Content type 'application/x-bzip2' length 113 bytes
==================================================
downloaded 113 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820638&key=anonymous_key'
Content type 'application/x-bzip2' length 8455 bytes
==================================================
downloaded 8455 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820639&key=anonymous_key'
Content type 'application/x-bzip2' length 8292 bytes
==================================================
downloaded 8292 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820640&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820641&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820642&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820643&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820644&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820645&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820646&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820647&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820648&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820649&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820650&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820651&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820652&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820653&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820654&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820655&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820656&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820657&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820658&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820659&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820660&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820661&key=anonymous_key'
Content type 'application/x-bzip2' length 76 bytes
==================================================
downloaded 76 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820662&key=anonymous_key'
Content type 'application/x-bzip2' length 104 bytes
==================================================
downloaded 104 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820663&key=anonymous_key'
Content type 'application/x-bzip2' length 10234 bytes
==================================================
downloaded 10234 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820664&key=anonymous_key'
Content type 'application/x-bzip2' length 128 bytes
==================================================
downloaded 128 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820665&key=anonymous_key'
Content type 'application/x-bzip2' length 3033 bytes
==================================================
downloaded 3033 bytes
trying URL 'http://deepblue.mpi-inf.mpg.de/xmlrpc/download/?r=r820666&key=anonymous_key'
Content type 'application/x-bzip2' length 112 bytes
==================================================
downloaded 112 bytes
Killed
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR, 2 NOTEs
See
‘/home/biocbuild/bbs-3.17-bioc/meat/DeepBlueR.Rcheck/00check.log’
for details.
DeepBlueR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL DeepBlueR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘DeepBlueR’ ... ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading Called method: deepblue_list_column_types Reported status was: okay Called method: deepblue_info Reported status was: okay ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DeepBlueR)
DeepBlueR.Rcheck/DeepBlueR-Ex.timings
| name | user | system | elapsed | |
| deepblue_aggregate | 0.069 | 0.000 | 1.576 | |
| deepblue_batch_export_results | 0.308 | 0.036 | 5.601 | |
| deepblue_binning | 0.067 | 0.004 | 1.077 | |
| deepblue_cache_status | 0.003 | 0.000 | 0.002 | |
| deepblue_cancel_request | 0.014 | 0.000 | 0.510 | |
| deepblue_chromosomes | 0.062 | 0.000 | 0.574 | |
| deepblue_clear_cache | 0.001 | 0.000 | 0.001 | |
| deepblue_collection_experiments_count | 0.107 | 0.000 | 1.025 | |
| deepblue_commands | 0.121 | 0.000 | 1.408 | |
| deepblue_count_gene_ontology_terms | 0.105 | 0.004 | 0.878 | |
| deepblue_count_regions | 0.032 | 0.000 | 1.034 | |
| deepblue_coverage | 0.030 | 0.004 | 1.027 | |
| deepblue_delete_request_from_cache | 0.000 | 0.003 | 0.002 | |
| deepblue_diff | 0.124 | 0.017 | 1.153 | |
| deepblue_distinct_column_values | 0.039 | 0.000 | 1.040 | |
| deepblue_download_request_data | 0.179 | 0.008 | 2.936 | |
| deepblue_echo | 0.009 | 0.004 | 0.491 | |
| deepblue_enrich_regions_go_terms | 0.058 | 0.004 | 1.528 | |
| deepblue_enrich_regions_overlap | 0.621 | 0.068 | 6.536 | |
| deepblue_export_bed | 0.205 | 0.004 | 4.194 | |
| deepblue_export_meta_data | 0.313 | 0.004 | 1.047 | |
| deepblue_export_tab | 0.116 | 0.008 | 2.138 | |
| deepblue_extend | 0.044 | 0.000 | 1.054 | |
| deepblue_extract_ids | 0.001 | 0.000 | 0.001 | |
| deepblue_extract_names | 0.001 | 0.000 | 0.000 | |
| deepblue_faceting_experiments | 0.029 | 0.000 | 0.918 | |
| deepblue_filter_regions | 0.021 | 0.000 | 0.522 | |
| deepblue_find_motif | 0.024 | 0.000 | 0.534 | |
| deepblue_flank | 0.043 | 0.000 | 1.080 | |
| deepblue_get_biosource_children | 0.017 | 0.000 | 0.532 | |
| deepblue_get_biosource_parents | 0.013 | 0.000 | 0.502 | |
| deepblue_get_biosource_related | 0.017 | 0.000 | 0.531 | |
| deepblue_get_biosource_synonyms | 0.015 | 0.000 | 0.531 | |
| deepblue_get_experiments_by_query | 0.010 | 0.004 | 0.526 | |
| deepblue_get_regions | 0.033 | 0.000 | 1.026 | |
| deepblue_get_request_data | 0.081 | 0.004 | 2.024 | |
| deepblue_info | 0.026 | 0.008 | 0.533 | |
| deepblue_input_regions | 0.017 | 0.000 | 0.530 | |
| deepblue_intersection | 0.055 | 0.000 | 1.568 | |
| deepblue_is_biosource | 0.014 | 0.000 | 0.499 | |
| deepblue_liftover | 0.462 | 0.020 | 15.091 | |
| deepblue_list_annotations | 0.019 | 0.004 | 0.528 | |
| deepblue_list_biosources | 0.017 | 0.000 | 0.515 | |
| deepblue_list_cached_requests | 0.002 | 0.000 | 0.002 | |
| deepblue_list_column_types | 0.062 | 0.000 | 0.806 | |
| deepblue_list_epigenetic_marks | 0.435 | 0.004 | 1.714 | |
| deepblue_list_experiments | 0.159 | 0.000 | 1.197 | |
| deepblue_list_expressions | 0.137 | 0.000 | 0.866 | |
| deepblue_list_gene_models | 0.011 | 0.004 | 0.500 | |
| deepblue_list_genes | 0.312 | 0.008 | 1.851 | |
| deepblue_list_genomes | 0.016 | 0.000 | 0.520 | |
| deepblue_list_in_use | 0.397 | 0.000 | 2.176 | |
| deepblue_list_projects | 0.017 | 0.000 | 0.521 | |
| deepblue_list_recent_experiments | 0.030 | 0.000 | 0.536 | |
| deepblue_list_requests | 0.018 | 0.000 | 0.532 | |
| deepblue_list_samples | 0.130 | 0.008 | 1.179 | |
| deepblue_list_similar_biosources | 0.024 | 0.000 | 0.678 | |
| deepblue_list_similar_epigenetic_marks | 0.022 | 0.000 | 0.527 | |
| deepblue_list_similar_experiments | 0.017 | 0.000 | 1.029 | |
| deepblue_list_similar_genomes | 0.016 | 0.000 | 0.502 | |
| deepblue_list_similar_projects | 0.016 | 0.000 | 0.519 | |
| deepblue_list_similar_techniques | 0.017 | 0.000 | 0.527 | |
| deepblue_list_techniques | 0.026 | 0.000 | 0.526 | |
| deepblue_merge_queries | 0.058 | 0.000 | 1.532 | |
| deepblue_meta_data_to_table | 0.392 | 0.016 | 1.929 | |
| deepblue_name_to_id | 0.044 | 0.004 | 1.524 | |
| deepblue_overlap | 0.059 | 0.004 | 1.527 | |
| deepblue_preview_experiment | 0.015 | 0.000 | 0.519 | |
| deepblue_query_cache | 0.074 | 0.000 | 2.045 | |
| deepblue_query_experiment_type | 0.046 | 0.000 | 1.054 | |
| deepblue_reset_options | 0.000 | 0.000 | 0.001 | |
| deepblue_score_matrix | 0.042 | 0.000 | 1.025 | |
| deepblue_search | 0.045 | 0.000 | 0.853 | |
| deepblue_select_annotations | 0.023 | 0.000 | 0.525 | |
| deepblue_select_column | 0.390 | 0.000 | 1.619 | |
| deepblue_select_experiments | 0.020 | 0.000 | 0.501 | |
| deepblue_select_expressions | 0.025 | 0.000 | 0.533 | |
| deepblue_select_genes | 0.024 | 0.000 | 0.503 | |
| deepblue_select_regions | 0.028 | 0.000 | 0.512 | |
| deepblue_tiling_regions | 0.019 | 0.000 | 0.498 | |