| Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:02 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the ExperimentHub package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ExperimentHub.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 639/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ExperimentHub 2.7.0 (landing page) Bioconductor Package Maintainer
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | TIMEOUT | |||||||||
| Package: ExperimentHub |
| Version: 2.7.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ExperimentHub_2.7.0.tar.gz |
| StartedAt: 2023-02-07 01:19:13 -0000 (Tue, 07 Feb 2023) |
| EndedAt: 2023-02-07 01:59:14 -0000 (Tue, 07 Feb 2023) |
| EllapsedTime: 2400.5 seconds |
| RetCode: None |
| Status: TIMEOUT |
| CheckDir: ExperimentHub.Rcheck |
| Warnings: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:ExperimentHub.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings ExperimentHub_2.7.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/ExperimentHub.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘ExperimentHub/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ExperimentHub’ version ‘2.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ExperimentHub’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Problems with news in ‘NEWS’:
Cannot process chunk/lines:
Package added to release BioC 3.4
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘curl’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
createHubAccessors : <anonymous>: no visible binding for global
variable ‘title’
Undefined global functions or variables:
title
Consider adding
importFrom("graphics", "title")
to your NAMESPACE file.
* checking Rd files ... WARNING
checkRd: (5) ExperimentHub-class.Rd:70-83: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:92-95: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:96-99: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:100-103: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:104-108: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:109-115: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:116-120: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:121-126: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:127-161: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:169-173: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:174-178: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:179-185: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:186-207: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:208-216: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:217-222: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:223-227: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:228-232: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:239-243: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:244-248: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:249-260: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:261-264: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:265-268: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:269-276: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:277-284: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:285-290: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:297-301: \item in \describe must have non-empty label
checkRd: (5) ExperimentHub-class.Rd:302-306: \item in \describe must have non-empty label
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ...
ExperimentHub.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ExperimentHub ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘ExperimentHub’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ExperimentHub)
ExperimentHub.Rcheck/ExperimentHub-Ex.timings
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