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This page was generated on 2023-02-08 01:15:03 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the FLAMES package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FLAMES.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 674/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| FLAMES 1.5.4 (landing page) Voogd Oliver
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | ERROR | ERROR | skipped | |||||||||
| Package: FLAMES |
| Version: 1.5.4 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES |
| StartedAt: 2023-02-06 08:15:47 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 08:16:02 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 15.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FLAMES
###
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* checking for file ‘FLAMES/DESCRIPTION’ ... OK
* preparing ‘FLAMES’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘FLAMES’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c RcppFunctions.cpp -o RcppFunctions.o
In file included from main-functions/../utility/fastq_utils.h:7,
from main-functions/match_cell_barcode.h:13,
from RcppFunctions.cpp:7:
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:185:19: warning: ‘int kseq_read(kseq_t*)’ defined but not used [-Wunused-function]
185 | SCOPE int kseq_read(kseq_t *seq) \
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:185:19: note: in definition of macro ‘__KSEQ_READ’
185 | SCOPE int kseq_read(kseq_t *seq) \
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’
240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
| ^~~~~~~~~~
main-functions/../utility/fastq_utils.h:12:1: note: in expansion of macro ‘KSEQ_INIT’
12 | KSEQ_INIT(gzFile, gzread)
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:171:20: warning: ‘void kseq_destroy(kseq_t*)’ defined but not used [-Wunused-function]
171 | SCOPE void kseq_destroy(kseq_t *ks) \
| ^~~~~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:171:20: note: in definition of macro ‘__KSEQ_BASIC’
171 | SCOPE void kseq_destroy(kseq_t *ks) \
| ^~~~~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’
240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
| ^~~~~~~~~~
main-functions/../utility/fastq_utils.h:12:1: note: in expansion of macro ‘KSEQ_INIT’
12 | KSEQ_INIT(gzFile, gzread)
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:165:23: warning: ‘kseq_t* kseq_init(gzFile)’ defined but not used [-Wunused-function]
165 | SCOPE kseq_t *kseq_init(type_t fd) \
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:165:23: note: in definition of macro ‘__KSEQ_BASIC’
165 | SCOPE kseq_t *kseq_init(type_t fd) \
| ^~~~~~~~~
/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include/htslib/kseq.h:240:35: note: in expansion of macro ‘KSEQ_INIT2’
240 | #define KSEQ_INIT(type_t, __read) KSEQ_INIT2(static, type_t, __read)
| ^~~~~~~~~~
main-functions/../utility/fastq_utils.h:12:1: note: in expansion of macro ‘KSEQ_INIT’
12 | KSEQ_INIT(gzFile, gzread)
| ^~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rcpp/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/Rhtslib/include' -I'/home/biocbuild/bbs-3.17-bioc/R/library/zlibbioc/include' -I/usr/local/include -fPIC -g -O2 -Wall -c utility/ssw/ssw_cpp.cpp -o utility/ssw/ssw_cpp.o
In file included from utility/ssw/ssw_cpp.cpp:6:
utility/ssw/ssw.h:19:10: fatal error: sse2neon.h: No such file or directory
19 | #include "sse2neon.h"
| ^~~~~~~~~~~~
compilation terminated.
make: *** [/home/biocbuild/bbs-3.17-bioc/R/etc/Makeconf:198: utility/ssw/ssw_cpp.o] Error 1
ERROR: compilation failed for package ‘FLAMES’
* removing ‘/tmp/RtmphOQuTE/Rinst1124c31f1729e0/FLAMES’
-----------------------------------
ERROR: package installation failed