Build/check report for BioC 3.17 - BUILD results for FlowSOM on kunpeng1

Hostname	OS	Arch (*)	R version	Installed pkgs
kunpeng1	Linux (Ubuntu 22.04.1 LTS)	aarch64	R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"	4164
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

To the developers/maintainers of the FlowSOM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/FlowSOM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data FlowSOM
###
##############################################################################
##############################################################################


* checking for file ‘FlowSOM/DESCRIPTION’ ... OK
* preparing ‘FlowSOM’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘FlowSOM.Rnw’ using Sweave
Loading required package: igraph

Attaching package: ‘igraph’

The following objects are masked from ‘package:stats’:

    decompose, spectrum

The following object is masked from ‘package:base’:

    union

Thanks for using FlowSOM. From version 2.1.4 on, the scale 
parameter in the FlowSOM function defaults to FALSE
Plot FlowSOM trees
Calculate t-SNE
Plot cluster per metacluster distribution
Plot heatmap
Make tables
Printing

Attaching package: ‘flowCore’

The following object is masked from ‘package:igraph’:

    normalize

Reading file /tmp/RtmpAdXq2U/Rinst11489d7ce0bc81/FlowSOM/extdata/68983.fcs

Scaling the data

Scaling the data

Building SOM

Mapping data to SOM

Building MST

The packages "CytoML" and "flowWorkspace" are necessary for the function GetFlowJoLabels, but are not available.

Error: processing vignette 'FlowSOM.Rnw' failed with diagnostics:
 chunk 17 
Error in PlotPies(fSOM, cellTypes = gatingResult$manual) : 
  There are 19225 cells, while you provided 0 labels. These numbers should match.

--- failed re-building ‘FlowSOM.Rnw’

SUMMARY: processing the following file failed:
  ‘FlowSOM.Rnw’

Error: Vignette re-building failed.
Execution halted

BUILD results for FlowSOM on kunpeng1

Summary

Command output