Back to Build/check report for BioC 3.17
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2023-02-08 01:15:06 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for GIGSEA on kunpeng1


To the developers/maintainers of the GIGSEA package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GIGSEA.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 808/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GIGSEA 1.17.0  (landing page)
Shijia Zhu
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/GIGSEA
git_branch: master
git_last_commit: f8e9bd4
git_last_commit_date: 2022-11-01 15:17:57 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    ERROR  skipped

Summary

Package: GIGSEA
Version: 1.17.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GIGSEA
StartedAt: 2023-02-06 08:48:20 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 08:51:50 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 210.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data GIGSEA
###
##############################################################################
##############################################################################


* checking for file ‘GIGSEA/DESCRIPTION’ ... OK
* preparing ‘GIGSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GIGSEA_tutorial.Rmd’ using rmarkdown
Quitting from lines 262-299 (GIGSEA_tutorial.Rmd) 
Error: processing vignette 'GIGSEA_tutorial.Rmd' failed with diagnostics:
cannot read from connection
--- failed re-building ‘GIGSEA_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘GIGSEA_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted