Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:07 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the GSgalgoR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GSgalgoR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 862/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
GSgalgoR 1.9.0 (landing page) Carlos Catania
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: GSgalgoR |
Version: 1.9.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings GSgalgoR_1.9.0.tar.gz |
StartedAt: 2023-02-07 03:55:50 -0000 (Tue, 07 Feb 2023) |
EndedAt: 2023-02-07 04:02:12 -0000 (Tue, 07 Feb 2023) |
EllapsedTime: 381.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GSgalgoR.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:GSgalgoR.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings GSgalgoR_1.9.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/GSgalgoR.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘GSgalgoR/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘GSgalgoR’ version ‘1.9.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GSgalgoR’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed plot_pareto 3.357 0.073 12.763 classify_multiple 2.868 0.118 10.666 callback_base_report 2.643 0.148 13.184 create_centroids 2.518 0.045 10.563 non_dominated_summary 2.354 0.050 8.836 to_dataframe 2.330 0.046 9.268 to_list 2.273 0.071 8.148 galgo 2.061 0.032 8.846 callback_default 1.979 0.086 9.413 callback_base_return_pop 1.968 0.091 10.236 callback_no_report 1.928 0.087 9.118 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘GSgalgoR.rmd’ using ‘UTF-8’... OK ‘GSgalgoR_callbacks.rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: OK
GSgalgoR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL GSgalgoR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘GSgalgoR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (GSgalgoR)
GSgalgoR.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(GSgalgoR) > > test_check("GSgalgoR") .......... k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 9 0.02402496 160.41638 1 1.37352 result.4 8 0.03651880 48.37265 1 Inf k rnkIndex CrowD result.1 8 0.02212350 201.10126 1 Inf result.3 2 0.11803624 30.01863 1 Inf result.4 4 0.04509859 173.43985 1 1.798893 ......[ FAIL 0 | WARN 0 | SKIP 0 | PASS 13 ] > > proc.time() user system elapsed 19.603 0.737 78.650
GSgalgoR.Rcheck/GSgalgoR-Ex.timings
name | user | system | elapsed | |
calculate_distance | 4.048 | 0.057 | 4.419 | |
callback_base_report | 2.643 | 0.148 | 13.184 | |
callback_base_return_pop | 1.968 | 0.091 | 10.236 | |
callback_default | 1.979 | 0.086 | 9.413 | |
callback_no_report | 1.928 | 0.087 | 9.118 | |
classify_multiple | 2.868 | 0.118 | 10.666 | |
cluster_algorithm | 2.599 | 0.023 | 2.818 | |
cluster_classify | 2.336 | 0.056 | 3.016 | |
cosine_similarity | 0 | 0 | 0 | |
create_centroids | 2.518 | 0.045 | 10.563 | |
galgo | 2.061 | 0.032 | 8.846 | |
k_centroids | 2.920 | 0.029 | 3.117 | |
non_dominated_summary | 2.354 | 0.050 | 8.836 | |
plot_pareto | 3.357 | 0.073 | 12.763 | |
surv_fitness | 0.696 | 0.032 | 0.898 | |
to_dataframe | 2.330 | 0.046 | 9.268 | |
to_list | 2.273 | 0.071 | 8.148 | |