| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-08 01:15:08 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 914/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: HPiP |
| Version: 1.5.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
| StartedAt: 2023-02-07 04:39:21 -0000 (Tue, 07 Feb 2023) |
| EndedAt: 2023-02-07 04:56:46 -0000 (Tue, 07 Feb 2023) |
| EllapsedTime: 1044.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: HPiP.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘HPiP/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HPiP’ version ‘1.5.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘HPiP’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Package unavailable to check Rd xrefs: ‘ftrCOOL’
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
var_imp 39.797 0.411 40.224
corr_plot 37.944 0.388 38.587
FSmethod 36.485 0.335 36.836
pred_ensembel 18.094 0.394 17.266
getFASTA 0.874 0.008 7.670
enrichfindP 0.465 0.069 38.652
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK
NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’
for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('HPiP')
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
No results to show
Please make sure that the organism is correct or set significant = FALSE
avNNet
Loading required package: ggplot2
Loading required package: lattice
Fitting Repeat 1
# weights: 103
initial value 102.580067
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 105.455069
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 100.040780
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 95.147308
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 108.302037
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 111.886615
iter 10 value 94.467391
iter 10 value 94.467391
iter 10 value 94.467391
final value 94.467391
converged
Fitting Repeat 2
# weights: 305
initial value 95.512460
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 102.675893
final value 94.467391
converged
Fitting Repeat 4
# weights: 305
initial value 99.584751
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 102.129159
final value 94.484210
converged
Fitting Repeat 1
# weights: 507
initial value 109.033114
final value 94.467391
converged
Fitting Repeat 2
# weights: 507
initial value 101.975760
iter 10 value 94.313415
iter 20 value 93.731227
iter 30 value 93.660996
iter 40 value 93.660681
final value 93.660676
converged
Fitting Repeat 3
# weights: 507
initial value 106.546611
final value 94.467392
converged
Fitting Repeat 4
# weights: 507
initial value 95.101882
iter 10 value 93.287557
iter 20 value 91.593199
final value 91.593023
converged
Fitting Repeat 5
# weights: 507
initial value 97.723103
final value 94.467391
converged
Fitting Repeat 1
# weights: 103
initial value 103.078580
iter 10 value 94.452743
iter 20 value 93.419572
iter 30 value 90.983681
iter 40 value 89.918193
iter 50 value 88.082171
iter 60 value 86.475484
iter 70 value 86.214770
iter 80 value 85.446262
iter 90 value 84.953816
iter 100 value 84.869313
final value 84.869313
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 96.854862
iter 10 value 92.054439
iter 20 value 86.722721
iter 30 value 85.770267
iter 40 value 85.317514
iter 50 value 84.095205
iter 60 value 82.780322
iter 70 value 82.356253
iter 80 value 82.332043
final value 82.332033
converged
Fitting Repeat 3
# weights: 103
initial value 99.101898
iter 10 value 94.363952
iter 20 value 92.195697
iter 30 value 92.025036
iter 40 value 91.958428
iter 50 value 91.927624
iter 60 value 91.380187
iter 70 value 91.329447
final value 91.329417
converged
Fitting Repeat 4
# weights: 103
initial value 108.218972
iter 10 value 94.181416
iter 20 value 88.508827
iter 30 value 88.242373
iter 40 value 87.769104
iter 50 value 86.548831
iter 60 value 85.964323
iter 70 value 85.925130
final value 85.924343
converged
Fitting Repeat 5
# weights: 103
initial value 115.899032
iter 10 value 94.518955
iter 20 value 94.486985
iter 30 value 94.409043
iter 40 value 88.803109
iter 50 value 85.256059
iter 60 value 84.637275
iter 70 value 83.043736
iter 80 value 81.965836
iter 90 value 81.883091
final value 81.883085
converged
Fitting Repeat 1
# weights: 305
initial value 102.382195
iter 10 value 94.656474
iter 20 value 94.127808
iter 30 value 86.276957
iter 40 value 85.173200
iter 50 value 84.637128
iter 60 value 84.388172
iter 70 value 83.453174
iter 80 value 82.399535
iter 90 value 81.854998
iter 100 value 81.445990
final value 81.445990
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 105.445783
iter 10 value 94.093800
iter 20 value 88.955650
iter 30 value 88.121173
iter 40 value 87.496419
iter 50 value 87.360238
iter 60 value 86.608839
iter 70 value 84.688935
iter 80 value 84.438756
iter 90 value 81.156666
iter 100 value 80.784375
final value 80.784375
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.463097
iter 10 value 94.533951
iter 20 value 88.759529
iter 30 value 86.933495
iter 40 value 84.065050
iter 50 value 81.241812
iter 60 value 80.629918
iter 70 value 80.335059
iter 80 value 80.264144
iter 90 value 80.166509
iter 100 value 80.137248
final value 80.137248
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.412840
iter 10 value 94.630795
iter 20 value 91.933624
iter 30 value 87.382475
iter 40 value 83.938416
iter 50 value 82.698056
iter 60 value 80.864609
iter 70 value 80.792986
iter 80 value 80.615921
iter 90 value 80.464118
iter 100 value 80.040923
final value 80.040923
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 113.156385
iter 10 value 97.667473
iter 20 value 90.234273
iter 30 value 84.237530
iter 40 value 83.046589
iter 50 value 82.330952
iter 60 value 81.450769
iter 70 value 81.235821
iter 80 value 80.933042
iter 90 value 80.703865
iter 100 value 80.024524
final value 80.024524
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 113.771267
iter 10 value 94.600567
iter 20 value 93.083270
iter 30 value 87.993028
iter 40 value 84.636007
iter 50 value 83.704731
iter 60 value 83.113754
iter 70 value 81.562673
iter 80 value 80.651312
iter 90 value 80.471094
iter 100 value 80.372580
final value 80.372580
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 103.582134
iter 10 value 94.248541
iter 20 value 90.944795
iter 30 value 86.471026
iter 40 value 84.072441
iter 50 value 82.669115
iter 60 value 82.065961
iter 70 value 80.696873
iter 80 value 80.051029
iter 90 value 79.842913
iter 100 value 79.726734
final value 79.726734
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.351566
iter 10 value 99.101325
iter 20 value 87.575047
iter 30 value 85.645644
iter 40 value 84.163711
iter 50 value 82.660134
iter 60 value 82.145937
iter 70 value 82.098220
iter 80 value 81.728610
iter 90 value 81.404317
iter 100 value 80.527191
final value 80.527191
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 105.487095
iter 10 value 94.816583
iter 20 value 93.999340
iter 30 value 90.291045
iter 40 value 86.733958
iter 50 value 85.992023
iter 60 value 84.009508
iter 70 value 82.247714
iter 80 value 80.922070
iter 90 value 80.077892
iter 100 value 79.826599
final value 79.826599
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 105.412751
iter 10 value 93.332315
iter 20 value 88.362143
iter 30 value 87.296936
iter 40 value 82.373250
iter 50 value 80.680161
iter 60 value 80.098853
iter 70 value 79.769782
iter 80 value 79.596388
iter 90 value 79.449323
iter 100 value 79.396205
final value 79.396205
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 96.738728
final value 94.485988
converged
Fitting Repeat 2
# weights: 103
initial value 102.885277
final value 94.462637
converged
Fitting Repeat 3
# weights: 103
initial value 95.593318
final value 94.485868
converged
Fitting Repeat 4
# weights: 103
initial value 105.204786
final value 94.485987
converged
Fitting Repeat 5
# weights: 103
initial value 103.911949
final value 94.485591
converged
Fitting Repeat 1
# weights: 305
initial value 110.619954
iter 10 value 94.489229
iter 20 value 94.484142
iter 30 value 94.467435
final value 94.467417
converged
Fitting Repeat 2
# weights: 305
initial value 95.094620
iter 10 value 94.302016
iter 20 value 93.427752
iter 30 value 91.473717
iter 40 value 91.115592
iter 50 value 90.909829
iter 60 value 90.909224
iter 70 value 90.897489
iter 80 value 90.897341
iter 90 value 90.896935
final value 90.896930
converged
Fitting Repeat 3
# weights: 305
initial value 107.135443
iter 10 value 94.488579
iter 20 value 94.422838
iter 30 value 87.572447
iter 40 value 86.908543
iter 50 value 84.262722
iter 60 value 84.060339
iter 70 value 84.059955
iter 80 value 82.910737
iter 90 value 82.497394
iter 100 value 82.476842
final value 82.476842
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 95.364164
iter 10 value 94.472519
iter 20 value 93.612077
iter 30 value 85.650995
iter 40 value 83.408541
iter 50 value 83.265682
iter 60 value 83.264835
iter 70 value 83.249075
iter 80 value 82.858876
final value 82.811967
converged
Fitting Repeat 5
# weights: 305
initial value 102.651549
iter 10 value 88.383382
iter 20 value 87.490858
iter 30 value 87.484283
iter 40 value 86.443017
iter 50 value 86.162598
iter 60 value 86.151507
iter 70 value 86.147742
iter 80 value 86.147017
iter 90 value 85.943953
iter 100 value 85.804171
final value 85.804171
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 97.798447
iter 10 value 94.492340
iter 20 value 94.481737
iter 30 value 94.467732
iter 40 value 94.374375
iter 50 value 94.134233
iter 60 value 86.716887
iter 70 value 86.314138
iter 80 value 85.630375
iter 90 value 83.628509
iter 100 value 82.154846
final value 82.154846
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 116.091110
iter 10 value 94.492087
iter 20 value 94.474386
iter 30 value 89.890742
iter 40 value 86.081990
iter 50 value 84.273938
iter 60 value 84.260431
final value 84.260232
converged
Fitting Repeat 3
# weights: 507
initial value 114.147486
iter 10 value 94.474984
iter 20 value 94.345490
iter 30 value 92.742315
iter 40 value 92.279674
final value 92.277287
converged
Fitting Repeat 4
# weights: 507
initial value 119.814650
iter 10 value 94.492317
iter 20 value 94.461235
iter 30 value 88.314521
iter 40 value 85.390144
iter 50 value 84.354353
iter 60 value 84.200259
iter 70 value 84.200076
iter 80 value 84.087259
iter 90 value 82.883517
iter 100 value 82.833612
final value 82.833612
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.227014
iter 10 value 94.492419
iter 20 value 94.484919
iter 30 value 94.389497
iter 40 value 94.304329
iter 50 value 94.068761
iter 60 value 93.865501
iter 70 value 85.055000
iter 80 value 84.288821
iter 90 value 84.050577
iter 100 value 84.046866
final value 84.046866
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.018851
final value 94.484211
converged
Fitting Repeat 2
# weights: 103
initial value 102.698085
iter 10 value 93.772976
final value 93.772973
converged
Fitting Repeat 3
# weights: 103
initial value 97.208577
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 96.680277
final value 94.484211
converged
Fitting Repeat 5
# weights: 103
initial value 111.267920
final value 94.052434
converged
Fitting Repeat 1
# weights: 305
initial value 102.623311
iter 10 value 93.772989
final value 93.772973
converged
Fitting Repeat 2
# weights: 305
initial value 97.003686
final value 94.484211
converged
Fitting Repeat 3
# weights: 305
initial value 96.890000
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 94.985074
iter 10 value 93.772979
final value 93.772973
converged
Fitting Repeat 5
# weights: 305
initial value 95.753768
final value 94.484211
converged
Fitting Repeat 1
# weights: 507
initial value 107.731101
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 96.721479
final value 93.772973
converged
Fitting Repeat 3
# weights: 507
initial value 108.015752
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 105.397120
iter 10 value 93.772976
final value 93.772973
converged
Fitting Repeat 5
# weights: 507
initial value 102.108023
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 105.648677
iter 10 value 94.213500
iter 20 value 85.580748
iter 30 value 82.954373
iter 40 value 82.736389
iter 50 value 82.638876
iter 60 value 82.588022
final value 82.586568
converged
Fitting Repeat 2
# weights: 103
initial value 99.243673
iter 10 value 94.489373
iter 20 value 94.066072
iter 30 value 91.701401
iter 40 value 91.416411
iter 50 value 87.272560
iter 60 value 86.763092
iter 70 value 83.127812
iter 80 value 81.649229
iter 90 value 81.598357
iter 100 value 81.524278
final value 81.524278
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 101.996653
iter 10 value 94.836485
iter 20 value 94.488154
iter 30 value 94.029795
iter 40 value 93.982605
iter 50 value 93.436554
iter 60 value 90.003757
iter 70 value 86.663345
iter 80 value 83.424971
iter 90 value 83.043474
iter 100 value 83.037461
final value 83.037461
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 99.026017
iter 10 value 94.007130
iter 20 value 86.233276
iter 30 value 85.797536
iter 40 value 85.140016
iter 50 value 83.011624
iter 60 value 82.997131
iter 70 value 82.996809
iter 80 value 82.996612
final value 82.996606
converged
Fitting Repeat 5
# weights: 103
initial value 97.133446
iter 10 value 94.001214
iter 20 value 93.968296
iter 30 value 87.887752
iter 40 value 83.995743
iter 50 value 83.063818
iter 60 value 82.998829
iter 70 value 82.977623
final value 82.977622
converged
Fitting Repeat 1
# weights: 305
initial value 107.945474
iter 10 value 94.546334
iter 20 value 94.432603
iter 30 value 88.670859
iter 40 value 82.828541
iter 50 value 82.651893
iter 60 value 81.755858
iter 70 value 81.451028
iter 80 value 81.390086
iter 90 value 81.219796
iter 100 value 80.623237
final value 80.623237
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 110.941457
iter 10 value 93.394562
iter 20 value 83.013899
iter 30 value 82.841857
iter 40 value 82.420134
iter 50 value 81.635811
iter 60 value 81.500740
iter 70 value 81.350830
iter 80 value 81.181704
iter 90 value 80.814665
iter 100 value 80.655881
final value 80.655881
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 105.283447
iter 10 value 94.164959
iter 20 value 92.195260
iter 30 value 85.238774
iter 40 value 83.061907
iter 50 value 82.945333
iter 60 value 82.689397
iter 70 value 82.476626
iter 80 value 82.469179
iter 90 value 82.467717
iter 100 value 81.420035
final value 81.420035
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 113.295891
iter 10 value 94.419104
iter 20 value 93.621698
iter 30 value 86.641584
iter 40 value 84.467120
iter 50 value 82.654603
iter 60 value 82.452560
iter 70 value 82.295356
iter 80 value 81.935320
iter 90 value 80.888930
iter 100 value 80.144979
final value 80.144979
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 108.760589
iter 10 value 94.474666
iter 20 value 89.104283
iter 30 value 83.972361
iter 40 value 82.430146
iter 50 value 80.939728
iter 60 value 80.397489
iter 70 value 80.210325
iter 80 value 80.061793
iter 90 value 79.766578
iter 100 value 79.588286
final value 79.588286
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 133.977359
iter 10 value 95.362971
iter 20 value 94.262979
iter 30 value 89.902291
iter 40 value 88.455923
iter 50 value 87.023402
iter 60 value 83.063961
iter 70 value 81.104074
iter 80 value 80.406235
iter 90 value 79.974809
iter 100 value 79.813533
final value 79.813533
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 119.537629
iter 10 value 93.674556
iter 20 value 90.296005
iter 30 value 89.450592
iter 40 value 86.439248
iter 50 value 83.166382
iter 60 value 82.399703
iter 70 value 82.335969
iter 80 value 82.054601
iter 90 value 81.354965
iter 100 value 80.997333
final value 80.997333
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.427917
iter 10 value 93.513065
iter 20 value 91.558350
iter 30 value 86.037993
iter 40 value 84.111264
iter 50 value 82.924733
iter 60 value 81.283298
iter 70 value 80.252100
iter 80 value 79.676412
iter 90 value 79.431075
iter 100 value 79.341601
final value 79.341601
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.033898
iter 10 value 94.540289
iter 20 value 91.174587
iter 30 value 90.266555
iter 40 value 84.484571
iter 50 value 83.605739
iter 60 value 83.195944
iter 70 value 81.761830
iter 80 value 81.369714
iter 90 value 80.966354
iter 100 value 80.857026
final value 80.857026
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 118.641683
iter 10 value 94.405515
iter 20 value 91.260353
iter 30 value 84.280100
iter 40 value 83.508314
iter 50 value 82.155362
iter 60 value 81.689621
iter 70 value 81.466647
iter 80 value 81.426013
iter 90 value 81.397290
iter 100 value 81.342848
final value 81.342848
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.977069
final value 94.485825
converged
Fitting Repeat 2
# weights: 103
initial value 100.232068
final value 94.486194
converged
Fitting Repeat 3
# weights: 103
initial value 95.505756
final value 94.485838
converged
Fitting Repeat 4
# weights: 103
initial value 99.281808
iter 10 value 94.486011
iter 20 value 94.200135
iter 30 value 86.959474
iter 40 value 86.956594
iter 50 value 86.956449
iter 60 value 85.593398
iter 70 value 84.861790
iter 80 value 82.397215
final value 81.904198
converged
Fitting Repeat 5
# weights: 103
initial value 102.056149
iter 10 value 93.774978
iter 20 value 93.773975
iter 30 value 93.763629
iter 40 value 90.945818
iter 50 value 90.843330
iter 60 value 90.842976
final value 90.842941
converged
Fitting Repeat 1
# weights: 305
initial value 99.684971
iter 10 value 94.488556
iter 20 value 93.894340
iter 30 value 93.352162
iter 40 value 93.351924
final value 93.351849
converged
Fitting Repeat 2
# weights: 305
initial value 96.716463
iter 10 value 88.993683
iter 20 value 87.926583
iter 30 value 84.506593
iter 40 value 84.486612
iter 50 value 84.093415
iter 60 value 84.087611
iter 70 value 84.085442
final value 84.085283
converged
Fitting Repeat 3
# weights: 305
initial value 96.968057
iter 10 value 93.784016
iter 20 value 93.780623
iter 30 value 93.729624
iter 40 value 93.725239
iter 50 value 93.093010
iter 60 value 89.212466
iter 70 value 87.485373
iter 80 value 87.216302
iter 90 value 87.195520
iter 100 value 81.013185
final value 81.013185
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.920780
iter 10 value 93.457071
iter 20 value 93.374551
iter 30 value 93.370513
iter 40 value 93.361209
iter 50 value 93.357535
iter 60 value 93.157674
final value 93.157631
converged
Fitting Repeat 5
# weights: 305
initial value 96.595220
iter 10 value 94.488802
iter 20 value 94.452546
iter 30 value 89.950403
iter 40 value 84.676579
iter 50 value 83.809126
final value 83.807636
converged
Fitting Repeat 1
# weights: 507
initial value 131.278618
iter 10 value 93.426234
iter 20 value 93.395363
iter 30 value 93.295049
iter 40 value 93.292318
final value 93.291868
converged
Fitting Repeat 2
# weights: 507
initial value 109.276277
iter 10 value 84.308244
iter 20 value 84.083400
iter 30 value 84.075777
iter 40 value 84.072612
iter 50 value 84.071964
iter 60 value 84.070967
iter 70 value 83.815084
iter 80 value 83.565416
iter 90 value 83.520311
iter 100 value 83.443909
final value 83.443909
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 105.291600
iter 10 value 92.401923
iter 20 value 92.160891
iter 30 value 92.007825
iter 40 value 87.455287
iter 50 value 84.103818
iter 60 value 83.965455
iter 70 value 83.957012
iter 80 value 83.910412
iter 90 value 83.904476
iter 100 value 81.875923
final value 81.875923
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 97.162214
iter 10 value 94.491739
iter 20 value 94.196832
iter 30 value 93.339692
iter 40 value 92.427465
iter 50 value 92.408374
iter 60 value 92.122865
final value 92.122766
converged
Fitting Repeat 5
# weights: 507
initial value 108.843476
iter 10 value 94.060175
iter 20 value 93.750419
iter 30 value 85.985490
iter 40 value 82.917898
iter 50 value 82.896159
iter 60 value 82.763997
iter 70 value 82.761924
iter 80 value 82.759871
iter 90 value 81.296833
iter 100 value 79.889031
final value 79.889031
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 100.853786
iter 10 value 85.694112
iter 20 value 84.641278
iter 30 value 84.039107
iter 40 value 84.017630
final value 84.017612
converged
Fitting Repeat 2
# weights: 103
initial value 104.119671
final value 94.484211
converged
Fitting Repeat 3
# weights: 103
initial value 98.179892
final value 94.484211
converged
Fitting Repeat 4
# weights: 103
initial value 98.160122
final value 94.466823
converged
Fitting Repeat 5
# weights: 103
initial value 102.880675
final value 94.484211
converged
Fitting Repeat 1
# weights: 305
initial value 98.206232
final value 94.466823
converged
Fitting Repeat 2
# weights: 305
initial value 99.139124
final value 94.466823
converged
Fitting Repeat 3
# weights: 305
initial value 116.710089
final value 94.484211
converged
Fitting Repeat 4
# weights: 305
initial value 113.765247
final value 94.484211
converged
Fitting Repeat 5
# weights: 305
initial value 101.989910
iter 10 value 89.275774
iter 20 value 87.446213
iter 30 value 87.378876
iter 40 value 86.354600
iter 50 value 86.298867
iter 60 value 86.298322
final value 86.298282
converged
Fitting Repeat 1
# weights: 507
initial value 115.638152
final value 94.484211
converged
Fitting Repeat 2
# weights: 507
initial value 99.255263
iter 10 value 94.467447
final value 94.466823
converged
Fitting Repeat 3
# weights: 507
initial value 100.003430
final value 94.484211
converged
Fitting Repeat 4
# weights: 507
initial value 123.634308
final value 94.484211
converged
Fitting Repeat 5
# weights: 507
initial value 97.920088
final value 94.484211
converged
Fitting Repeat 1
# weights: 103
initial value 99.256037
iter 10 value 94.573759
iter 20 value 92.352523
iter 30 value 85.645523
iter 40 value 85.291012
iter 50 value 84.752388
iter 60 value 84.204390
final value 84.127255
converged
Fitting Repeat 2
# weights: 103
initial value 98.675158
iter 10 value 94.395587
iter 20 value 90.355735
iter 30 value 89.625255
iter 40 value 89.473980
iter 50 value 87.415265
iter 60 value 85.429143
iter 70 value 85.343272
iter 80 value 85.225832
iter 90 value 84.874806
iter 100 value 84.834701
final value 84.834701
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 109.164382
iter 10 value 94.454071
iter 20 value 90.406294
iter 30 value 88.259038
iter 40 value 87.670214
iter 50 value 85.604440
iter 60 value 83.707472
iter 70 value 82.967740
iter 80 value 82.855231
final value 82.855122
converged
Fitting Repeat 4
# weights: 103
initial value 103.811415
iter 10 value 94.489445
iter 20 value 87.693914
iter 30 value 85.470402
iter 40 value 84.810353
iter 50 value 84.609912
iter 60 value 84.508608
iter 70 value 84.398292
iter 80 value 84.105518
final value 84.104459
converged
Fitting Repeat 5
# weights: 103
initial value 99.400828
iter 10 value 91.012979
iter 20 value 87.845110
iter 30 value 83.976298
iter 40 value 83.799893
iter 50 value 83.681816
iter 60 value 83.566170
iter 70 value 83.346848
iter 80 value 83.032866
iter 90 value 82.680686
iter 100 value 82.653143
final value 82.653143
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 105.351833
iter 10 value 94.470420
iter 20 value 86.926837
iter 30 value 85.420528
iter 40 value 84.915495
iter 50 value 83.143268
iter 60 value 82.295494
iter 70 value 82.042159
iter 80 value 81.890993
iter 90 value 81.768299
iter 100 value 81.683674
final value 81.683674
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 115.931538
iter 10 value 94.614042
iter 20 value 89.096515
iter 30 value 87.568536
iter 40 value 87.191006
iter 50 value 85.932623
iter 60 value 85.220863
iter 70 value 85.115646
iter 80 value 85.097842
iter 90 value 85.047084
iter 100 value 84.870314
final value 84.870314
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 101.109006
iter 10 value 94.774157
iter 20 value 94.473419
iter 30 value 88.733485
iter 40 value 87.286892
iter 50 value 84.075677
iter 60 value 82.928079
iter 70 value 82.572231
iter 80 value 82.037330
iter 90 value 81.759516
iter 100 value 81.621957
final value 81.621957
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 121.204263
iter 10 value 94.494575
iter 20 value 90.125117
iter 30 value 87.311114
iter 40 value 85.560687
iter 50 value 84.983745
iter 60 value 84.714937
iter 70 value 82.931642
iter 80 value 82.282474
iter 90 value 82.067832
iter 100 value 81.970521
final value 81.970521
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 99.981140
iter 10 value 90.905863
iter 20 value 89.815446
iter 30 value 89.306025
iter 40 value 88.004786
iter 50 value 86.784441
iter 60 value 85.494154
iter 70 value 85.038868
iter 80 value 84.981598
iter 90 value 84.769152
iter 100 value 83.363286
final value 83.363286
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 108.326220
iter 10 value 94.468409
iter 20 value 86.855815
iter 30 value 85.501025
iter 40 value 84.724489
iter 50 value 83.806901
iter 60 value 83.044296
iter 70 value 82.604295
iter 80 value 82.224882
iter 90 value 81.850105
iter 100 value 81.784517
final value 81.784517
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 105.179708
iter 10 value 94.502424
iter 20 value 89.009305
iter 30 value 86.448513
iter 40 value 86.082000
iter 50 value 85.455370
iter 60 value 84.361139
iter 70 value 83.871238
iter 80 value 82.868502
iter 90 value 82.449796
iter 100 value 82.317854
final value 82.317854
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 113.633859
iter 10 value 94.139234
iter 20 value 86.111110
iter 30 value 85.477103
iter 40 value 85.284762
iter 50 value 83.654283
iter 60 value 82.455270
iter 70 value 82.114920
iter 80 value 81.973312
iter 90 value 81.552731
iter 100 value 81.244317
final value 81.244317
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 111.807361
iter 10 value 92.410115
iter 20 value 87.626690
iter 30 value 86.396355
iter 40 value 86.131639
iter 50 value 85.464540
iter 60 value 85.236713
iter 70 value 84.658076
iter 80 value 84.303110
iter 90 value 83.033151
iter 100 value 82.291008
final value 82.291008
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 119.282507
iter 10 value 94.752001
iter 20 value 87.114660
iter 30 value 85.581788
iter 40 value 85.000274
iter 50 value 83.654380
iter 60 value 82.679534
iter 70 value 82.477495
iter 80 value 82.191204
iter 90 value 81.533550
iter 100 value 81.448475
final value 81.448475
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 97.720721
final value 94.485735
converged
Fitting Repeat 2
# weights: 103
initial value 107.450969
iter 10 value 94.486056
iter 20 value 94.484228
iter 30 value 92.707169
iter 40 value 88.963325
iter 50 value 88.923982
final value 88.923867
converged
Fitting Repeat 3
# weights: 103
initial value 96.075354
final value 94.468478
converged
Fitting Repeat 4
# weights: 103
initial value 99.299556
iter 10 value 94.486016
iter 20 value 94.375540
iter 30 value 92.247896
iter 40 value 92.238634
iter 50 value 92.238271
iter 50 value 92.238270
iter 50 value 92.238270
final value 92.238270
converged
Fitting Repeat 5
# weights: 103
initial value 101.670782
final value 94.468240
converged
Fitting Repeat 1
# weights: 305
initial value 96.481617
iter 10 value 93.161448
iter 20 value 88.867697
iter 30 value 88.864601
iter 40 value 88.861960
iter 50 value 88.596536
iter 60 value 88.561318
iter 70 value 86.333394
iter 80 value 85.758041
iter 90 value 85.753299
iter 100 value 85.752624
final value 85.752624
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.502635
iter 10 value 94.472023
iter 20 value 94.467341
final value 94.467152
converged
Fitting Repeat 3
# weights: 305
initial value 108.615005
iter 10 value 94.611287
iter 20 value 94.603005
iter 30 value 94.415697
iter 40 value 92.014571
iter 50 value 91.926206
iter 60 value 85.289895
iter 70 value 84.765138
iter 80 value 84.479295
iter 90 value 84.278690
iter 100 value 84.239069
final value 84.239069
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 102.359647
iter 10 value 94.489152
iter 20 value 94.483773
iter 30 value 94.151756
iter 40 value 88.566340
iter 50 value 88.526672
iter 60 value 87.047101
iter 70 value 86.742035
final value 86.709926
converged
Fitting Repeat 5
# weights: 305
initial value 99.310478
iter 10 value 94.488605
iter 20 value 94.037435
iter 30 value 92.221704
iter 40 value 91.962138
iter 50 value 91.909669
iter 60 value 84.194229
iter 70 value 84.010957
iter 80 value 83.896987
iter 90 value 83.881339
iter 100 value 82.539153
final value 82.539153
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 135.167413
iter 10 value 89.883403
iter 20 value 88.788534
iter 30 value 85.837995
iter 40 value 85.280924
iter 50 value 84.273608
iter 60 value 83.777851
iter 70 value 83.553835
iter 80 value 83.456698
final value 83.455607
converged
Fitting Repeat 2
# weights: 507
initial value 112.511115
iter 10 value 94.475345
iter 20 value 94.470617
iter 30 value 94.469121
iter 40 value 94.466912
iter 50 value 94.281448
iter 60 value 89.277050
iter 70 value 84.700133
iter 80 value 84.115160
iter 90 value 82.753170
iter 100 value 81.515605
final value 81.515605
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 106.309814
iter 10 value 94.492430
iter 20 value 94.475107
iter 30 value 94.405445
iter 40 value 86.214137
iter 50 value 84.449407
iter 60 value 83.360855
iter 70 value 83.100122
iter 80 value 83.073764
iter 90 value 83.065076
iter 100 value 83.055940
final value 83.055940
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 127.778224
iter 10 value 90.887369
iter 20 value 90.689790
iter 30 value 89.919194
iter 40 value 89.055478
iter 50 value 88.906695
iter 60 value 88.887344
final value 88.886927
converged
Fitting Repeat 5
# weights: 507
initial value 130.066304
iter 10 value 94.492686
iter 20 value 94.452948
iter 30 value 94.208581
iter 40 value 89.421063
iter 50 value 88.515054
iter 60 value 82.421892
iter 70 value 81.927751
iter 80 value 81.907505
iter 90 value 81.821755
iter 100 value 81.757032
final value 81.757032
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 94.775832
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 103.024553
iter 10 value 86.807207
iter 20 value 86.648320
iter 30 value 86.648245
final value 86.648239
converged
Fitting Repeat 3
# weights: 103
initial value 95.390135
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 98.503528
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 100.071117
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 107.204977
final value 94.052910
converged
Fitting Repeat 2
# weights: 305
initial value 105.335704
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 94.306720
iter 10 value 93.865571
final value 93.798554
converged
Fitting Repeat 4
# weights: 305
initial value 122.564442
final value 94.052910
converged
Fitting Repeat 5
# weights: 305
initial value 94.912146
final value 94.052910
converged
Fitting Repeat 1
# weights: 507
initial value 105.813421
iter 10 value 92.043772
iter 20 value 86.046089
final value 86.014293
converged
Fitting Repeat 2
# weights: 507
initial value 107.288832
iter 10 value 84.393713
iter 20 value 81.247073
iter 30 value 80.954829
iter 40 value 80.841964
final value 80.841956
converged
Fitting Repeat 3
# weights: 507
initial value 99.243812
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 97.978916
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 5
# weights: 507
initial value 109.407502
final value 94.032967
converged
Fitting Repeat 1
# weights: 103
initial value 103.629511
iter 10 value 94.018759
iter 20 value 85.973603
iter 30 value 84.520339
iter 40 value 84.188129
iter 50 value 82.892089
iter 60 value 82.362861
iter 70 value 82.244081
iter 80 value 81.680676
iter 90 value 79.999802
iter 100 value 79.987103
final value 79.987103
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 95.795975
iter 10 value 94.057804
iter 20 value 92.963192
iter 30 value 85.097224
iter 40 value 82.673692
iter 50 value 81.916891
iter 60 value 81.127361
iter 70 value 80.969613
iter 80 value 80.588387
iter 90 value 80.357984
iter 100 value 80.050010
final value 80.050010
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 105.351267
iter 10 value 94.055873
iter 20 value 93.960336
iter 30 value 91.936096
iter 40 value 90.520909
iter 50 value 86.271925
iter 60 value 84.965137
iter 70 value 84.290017
iter 80 value 83.910160
iter 90 value 83.603586
iter 100 value 83.048738
final value 83.048738
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 96.264198
iter 10 value 94.060353
iter 20 value 94.055984
iter 30 value 93.606699
iter 40 value 91.447254
iter 50 value 87.347604
iter 60 value 86.444100
iter 70 value 85.911055
iter 80 value 85.881092
iter 90 value 85.863422
iter 100 value 85.665621
final value 85.665621
stopped after 100 iterations
Fitting Repeat 5
# weights: 103
initial value 99.750900
iter 10 value 94.011163
iter 20 value 93.028933
iter 30 value 86.218534
iter 40 value 84.042975
iter 50 value 83.610196
iter 60 value 83.008387
iter 70 value 82.897052
iter 80 value 82.887816
iter 80 value 82.887815
iter 80 value 82.887815
final value 82.887815
converged
Fitting Repeat 1
# weights: 305
initial value 104.447086
iter 10 value 94.376705
iter 20 value 91.684939
iter 30 value 89.843565
iter 40 value 88.037475
iter 50 value 84.806822
iter 60 value 83.499523
iter 70 value 81.266869
iter 80 value 80.491585
iter 90 value 80.086958
iter 100 value 80.032816
final value 80.032816
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 107.231509
iter 10 value 94.059549
iter 20 value 93.871635
iter 30 value 93.821448
iter 40 value 87.322331
iter 50 value 85.082247
iter 60 value 84.093772
iter 70 value 80.327241
iter 80 value 79.634868
iter 90 value 79.346809
iter 100 value 79.276236
final value 79.276236
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 99.001871
iter 10 value 93.928294
iter 20 value 90.472226
iter 30 value 85.333784
iter 40 value 82.472444
iter 50 value 81.168836
iter 60 value 80.224848
iter 70 value 79.214874
iter 80 value 78.981282
iter 90 value 78.933910
iter 100 value 78.742338
final value 78.742338
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 104.653358
iter 10 value 92.786553
iter 20 value 91.050049
iter 30 value 90.871468
iter 40 value 90.615271
iter 50 value 84.068948
iter 60 value 82.283744
iter 70 value 82.144711
iter 80 value 81.947378
iter 90 value 81.861562
iter 100 value 81.632337
final value 81.632337
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 125.243154
iter 10 value 94.022914
iter 20 value 87.030405
iter 30 value 84.629998
iter 40 value 83.943968
iter 50 value 83.641106
iter 60 value 83.104189
iter 70 value 82.960267
iter 80 value 80.626260
iter 90 value 78.849668
iter 100 value 78.694936
final value 78.694936
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 106.391763
iter 10 value 94.780036
iter 20 value 94.074789
iter 30 value 92.034113
iter 40 value 91.232481
iter 50 value 86.697444
iter 60 value 82.058670
iter 70 value 79.819029
iter 80 value 79.003083
iter 90 value 78.770226
iter 100 value 78.539708
final value 78.539708
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 146.193067
iter 10 value 93.851197
iter 20 value 84.930742
iter 30 value 84.517438
iter 40 value 80.678037
iter 50 value 79.883319
iter 60 value 79.727477
iter 70 value 79.567788
iter 80 value 79.483995
iter 90 value 79.282488
iter 100 value 78.832851
final value 78.832851
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 107.920712
iter 10 value 95.094056
iter 20 value 90.532370
iter 30 value 82.546740
iter 40 value 79.951860
iter 50 value 79.228292
iter 60 value 78.925869
iter 70 value 78.414576
iter 80 value 78.277667
iter 90 value 78.100192
iter 100 value 77.996971
final value 77.996971
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 102.912583
iter 10 value 94.209085
iter 20 value 93.966796
iter 30 value 92.348727
iter 40 value 85.593134
iter 50 value 85.277780
iter 60 value 83.179750
iter 70 value 80.794858
iter 80 value 79.300687
iter 90 value 78.493649
iter 100 value 78.226858
final value 78.226858
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.757319
iter 10 value 94.671648
iter 20 value 92.436132
iter 30 value 86.501369
iter 40 value 84.854316
iter 50 value 82.210347
iter 60 value 80.966333
iter 70 value 80.383889
iter 80 value 80.158622
iter 90 value 79.837170
iter 100 value 79.596863
final value 79.596863
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 104.952388
iter 10 value 94.073027
iter 20 value 94.053371
final value 94.052914
converged
Fitting Repeat 2
# weights: 103
initial value 103.413131
final value 94.054632
converged
Fitting Repeat 3
# weights: 103
initial value 96.333255
iter 10 value 94.054645
iter 20 value 94.052912
iter 20 value 94.052912
final value 94.052912
converged
Fitting Repeat 4
# weights: 103
initial value 100.022369
final value 94.054634
converged
Fitting Repeat 5
# weights: 103
initial value 99.981297
final value 94.054495
converged
Fitting Repeat 1
# weights: 305
initial value 100.005054
iter 10 value 94.057626
iter 20 value 94.052280
iter 30 value 86.275313
iter 40 value 86.173891
iter 50 value 86.167366
iter 60 value 83.039092
iter 70 value 83.038495
iter 80 value 82.940608
iter 90 value 82.910338
final value 82.905177
converged
Fitting Repeat 2
# weights: 305
initial value 95.273942
iter 10 value 94.057240
iter 20 value 91.721153
iter 30 value 83.102453
iter 40 value 83.006658
iter 50 value 82.838504
iter 60 value 82.834497
final value 82.834421
converged
Fitting Repeat 3
# weights: 305
initial value 99.648133
iter 10 value 94.057484
iter 20 value 93.653931
iter 30 value 86.249551
iter 40 value 84.866087
iter 50 value 84.568992
final value 84.568574
converged
Fitting Repeat 4
# weights: 305
initial value 96.234531
iter 10 value 94.037817
iter 20 value 94.033284
final value 94.033036
converged
Fitting Repeat 5
# weights: 305
initial value 108.475237
iter 10 value 94.057724
iter 20 value 94.053093
iter 30 value 88.942245
iter 40 value 85.251145
iter 50 value 85.247255
iter 60 value 84.944241
iter 70 value 84.680263
iter 80 value 84.678985
final value 84.676838
converged
Fitting Repeat 1
# weights: 507
initial value 96.162540
iter 10 value 94.061147
iter 20 value 94.048464
iter 30 value 91.619765
iter 40 value 91.616655
iter 50 value 91.611997
iter 60 value 91.089223
final value 91.086541
converged
Fitting Repeat 2
# weights: 507
initial value 101.929143
iter 10 value 94.040816
iter 20 value 94.033808
iter 30 value 93.456167
iter 40 value 92.262893
final value 92.262771
converged
Fitting Repeat 3
# weights: 507
initial value 112.436922
iter 10 value 93.636951
iter 20 value 93.636253
iter 30 value 93.634241
iter 40 value 86.227900
iter 50 value 86.157331
iter 60 value 83.045888
iter 70 value 82.870814
iter 80 value 82.870595
iter 90 value 82.448298
iter 100 value 81.022527
final value 81.022527
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 104.202017
iter 10 value 91.017532
iter 20 value 91.006513
iter 30 value 90.885368
iter 40 value 90.703453
iter 50 value 90.701703
iter 60 value 90.691637
iter 70 value 90.685969
iter 80 value 90.366405
iter 90 value 89.932403
iter 100 value 89.549579
final value 89.549579
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 106.002225
iter 10 value 89.372952
iter 20 value 82.622477
iter 30 value 81.766480
iter 40 value 81.322304
final value 81.321808
converged
Fitting Repeat 1
# weights: 103
initial value 94.130305
final value 94.052910
converged
Fitting Repeat 2
# weights: 103
initial value 106.426347
final value 94.052910
converged
Fitting Repeat 3
# weights: 103
initial value 96.407950
final value 94.052910
converged
Fitting Repeat 4
# weights: 103
initial value 103.886393
final value 94.052910
converged
Fitting Repeat 5
# weights: 103
initial value 95.372690
final value 94.052910
converged
Fitting Repeat 1
# weights: 305
initial value 109.952481
iter 10 value 87.218311
iter 20 value 85.070764
iter 30 value 84.979559
iter 40 value 84.972292
final value 84.972265
converged
Fitting Repeat 2
# weights: 305
initial value 116.962460
final value 94.052910
converged
Fitting Repeat 3
# weights: 305
initial value 127.247869
iter 10 value 94.052910
iter 10 value 94.052910
iter 10 value 94.052910
final value 94.052910
converged
Fitting Repeat 4
# weights: 305
initial value 95.540229
iter 10 value 93.401960
iter 20 value 93.352243
iter 30 value 93.343375
final value 93.343341
converged
Fitting Repeat 5
# weights: 305
initial value 114.244768
iter 10 value 88.855300
iter 20 value 87.698470
iter 30 value 87.602294
iter 40 value 87.565479
iter 50 value 87.563021
final value 87.562999
converged
Fitting Repeat 1
# weights: 507
initial value 94.720395
final value 93.671508
converged
Fitting Repeat 2
# weights: 507
initial value 101.002159
final value 93.900000
converged
Fitting Repeat 3
# weights: 507
initial value 119.681026
final value 94.052910
converged
Fitting Repeat 4
# weights: 507
initial value 106.808593
iter 10 value 93.361941
iter 20 value 93.109854
iter 30 value 92.985556
iter 40 value 92.985080
iter 40 value 92.985080
final value 92.985080
converged
Fitting Repeat 5
# weights: 507
initial value 99.970618
iter 10 value 92.170929
iter 20 value 89.758758
iter 30 value 89.391315
iter 40 value 89.263987
iter 40 value 89.263986
iter 40 value 89.263986
final value 89.263986
converged
Fitting Repeat 1
# weights: 103
initial value 102.178423
iter 10 value 94.032558
iter 20 value 92.647483
iter 30 value 92.364462
iter 40 value 88.309076
iter 50 value 87.379825
iter 60 value 86.902763
iter 70 value 86.848204
iter 80 value 83.191986
iter 90 value 82.990033
iter 100 value 82.760746
final value 82.760746
stopped after 100 iterations
Fitting Repeat 2
# weights: 103
initial value 111.208707
iter 10 value 93.112905
iter 20 value 85.994363
iter 30 value 84.708245
iter 40 value 84.239453
iter 50 value 83.899271
iter 60 value 83.455355
iter 70 value 83.399355
iter 80 value 82.702284
iter 90 value 81.671060
iter 100 value 81.660818
final value 81.660818
stopped after 100 iterations
Fitting Repeat 3
# weights: 103
initial value 96.304081
iter 10 value 94.059522
iter 20 value 93.838539
iter 30 value 93.443247
iter 40 value 93.094973
iter 50 value 87.251102
iter 60 value 86.883498
iter 70 value 85.479678
iter 80 value 85.017435
iter 90 value 84.148198
iter 100 value 82.417549
final value 82.417549
stopped after 100 iterations
Fitting Repeat 4
# weights: 103
initial value 98.096385
iter 10 value 94.063566
iter 20 value 85.842001
iter 30 value 85.104304
iter 40 value 84.055348
iter 50 value 83.885710
iter 60 value 83.856124
final value 83.855693
converged
Fitting Repeat 5
# weights: 103
initial value 97.590449
iter 10 value 94.028961
iter 20 value 92.254652
iter 30 value 87.796635
iter 40 value 86.048041
iter 50 value 85.090760
iter 60 value 83.907856
iter 70 value 82.994199
iter 80 value 82.114601
iter 90 value 82.052728
iter 100 value 81.753649
final value 81.753649
stopped after 100 iterations
Fitting Repeat 1
# weights: 305
initial value 109.145530
iter 10 value 94.077697
iter 20 value 94.011506
iter 30 value 87.209955
iter 40 value 84.290945
iter 50 value 83.602781
iter 60 value 81.954807
iter 70 value 80.891948
iter 80 value 80.624082
iter 90 value 80.435168
iter 100 value 80.241280
final value 80.241280
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 102.528046
iter 10 value 85.602452
iter 20 value 83.598649
iter 30 value 81.986706
iter 40 value 81.454919
iter 50 value 80.894694
iter 60 value 80.779002
iter 70 value 80.690688
iter 80 value 80.666366
iter 90 value 80.643166
iter 100 value 80.589974
final value 80.589974
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 111.570082
iter 10 value 94.056306
iter 20 value 91.857367
iter 30 value 85.072112
iter 40 value 84.512244
iter 50 value 84.009725
iter 60 value 82.637308
iter 70 value 81.178917
iter 80 value 80.891789
iter 90 value 80.366848
iter 100 value 80.099392
final value 80.099392
stopped after 100 iterations
Fitting Repeat 4
# weights: 305
initial value 115.135123
iter 10 value 94.190263
iter 20 value 93.508693
iter 30 value 92.244867
iter 40 value 89.175379
iter 50 value 84.675885
iter 60 value 82.032941
iter 70 value 81.159433
iter 80 value 80.819226
iter 90 value 80.449820
iter 100 value 80.276420
final value 80.276420
stopped after 100 iterations
Fitting Repeat 5
# weights: 305
initial value 109.876441
iter 10 value 93.984558
iter 20 value 89.843302
iter 30 value 86.062478
iter 40 value 85.041445
iter 50 value 83.458733
iter 60 value 82.767506
iter 70 value 82.117761
iter 80 value 80.971011
iter 90 value 80.702532
iter 100 value 80.571526
final value 80.571526
stopped after 100 iterations
Fitting Repeat 1
# weights: 507
initial value 131.098674
iter 10 value 93.759737
iter 20 value 90.398301
iter 30 value 86.609253
iter 40 value 83.174241
iter 50 value 82.213519
iter 60 value 81.535678
iter 70 value 80.980243
iter 80 value 80.700736
iter 90 value 80.546646
iter 100 value 80.471589
final value 80.471589
stopped after 100 iterations
Fitting Repeat 2
# weights: 507
initial value 107.097432
iter 10 value 92.701314
iter 20 value 85.612964
iter 30 value 84.342230
iter 40 value 83.919931
iter 50 value 83.320975
iter 60 value 83.081837
iter 70 value 83.021032
iter 80 value 82.976226
iter 90 value 82.623012
iter 100 value 81.585856
final value 81.585856
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 144.436818
iter 10 value 107.143922
iter 20 value 94.718927
iter 30 value 89.937987
iter 40 value 87.595064
iter 50 value 86.751725
iter 60 value 84.735652
iter 70 value 84.133567
iter 80 value 83.482038
iter 90 value 82.215867
iter 100 value 80.910394
final value 80.910394
stopped after 100 iterations
Fitting Repeat 4
# weights: 507
initial value 112.601815
iter 10 value 94.294970
iter 20 value 93.781548
iter 30 value 90.987044
iter 40 value 89.304048
iter 50 value 86.029149
iter 60 value 84.631769
iter 70 value 83.043599
iter 80 value 81.300115
iter 90 value 80.513541
iter 100 value 80.282077
final value 80.282077
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 131.930209
iter 10 value 94.184661
iter 20 value 92.929943
iter 30 value 88.992843
iter 40 value 86.527116
iter 50 value 85.765961
iter 60 value 85.363124
iter 70 value 85.276577
iter 80 value 83.944954
iter 90 value 83.707869
iter 100 value 82.690513
final value 82.690513
stopped after 100 iterations
Fitting Repeat 1
# weights: 103
initial value 105.539166
final value 94.054553
converged
Fitting Repeat 2
# weights: 103
initial value 108.627600
final value 94.055494
converged
Fitting Repeat 3
# weights: 103
initial value 97.232398
final value 94.054406
converged
Fitting Repeat 4
# weights: 103
initial value 94.135836
final value 94.054625
converged
Fitting Repeat 5
# weights: 103
initial value 100.302517
final value 94.054758
converged
Fitting Repeat 1
# weights: 305
initial value 98.720220
iter 10 value 94.061835
iter 20 value 94.017322
iter 30 value 93.581108
iter 40 value 93.578467
iter 50 value 93.552701
iter 60 value 92.245580
iter 70 value 85.029752
iter 80 value 83.138382
iter 90 value 83.012308
final value 83.012098
converged
Fitting Repeat 2
# weights: 305
initial value 97.772908
iter 10 value 94.057796
iter 20 value 94.027495
iter 30 value 93.584179
iter 40 value 93.583651
iter 50 value 93.582954
final value 93.582852
converged
Fitting Repeat 3
# weights: 305
initial value 104.797917
iter 10 value 93.580191
iter 20 value 93.577595
iter 30 value 90.911295
iter 40 value 84.335401
iter 50 value 84.204283
iter 60 value 83.526961
iter 70 value 83.085009
iter 70 value 83.085008
iter 70 value 83.085008
final value 83.085008
converged
Fitting Repeat 4
# weights: 305
initial value 104.301973
iter 10 value 93.587642
iter 20 value 93.544367
iter 30 value 92.073315
iter 40 value 85.520370
iter 50 value 85.192956
iter 60 value 84.998037
final value 84.965497
converged
Fitting Repeat 5
# weights: 305
initial value 106.139556
iter 10 value 94.055772
iter 20 value 94.045689
final value 93.602928
converged
Fitting Repeat 1
# weights: 507
initial value 99.035296
iter 10 value 93.591388
iter 20 value 93.585707
iter 30 value 93.579513
iter 40 value 93.459556
iter 50 value 93.330764
iter 60 value 93.330408
final value 93.330388
converged
Fitting Repeat 2
# weights: 507
initial value 95.458544
iter 10 value 94.059910
iter 20 value 93.858574
iter 30 value 89.098861
iter 40 value 88.953889
iter 50 value 88.899434
iter 60 value 88.888344
iter 70 value 86.198232
iter 80 value 86.118747
iter 90 value 86.113681
iter 100 value 84.849727
final value 84.849727
stopped after 100 iterations
Fitting Repeat 3
# weights: 507
initial value 111.766256
iter 10 value 94.061388
iter 20 value 94.018031
iter 30 value 91.050572
iter 40 value 84.053781
iter 50 value 82.877452
iter 60 value 82.805163
iter 70 value 82.409626
iter 80 value 82.355969
final value 82.355911
converged
Fitting Repeat 4
# weights: 507
initial value 108.738493
iter 10 value 94.059346
iter 20 value 91.888297
iter 30 value 89.807243
iter 40 value 85.298742
iter 50 value 85.270558
iter 60 value 84.772162
iter 70 value 84.766265
iter 80 value 84.765094
iter 90 value 84.383057
iter 100 value 84.110253
final value 84.110253
stopped after 100 iterations
Fitting Repeat 5
# weights: 507
initial value 109.600593
iter 10 value 94.060658
iter 20 value 94.053244
iter 30 value 94.052913
iter 30 value 94.052912
iter 30 value 94.052912
final value 94.052912
converged
Fitting Repeat 1
# weights: 305
initial value 135.944876
iter 10 value 117.895191
iter 20 value 117.862454
iter 30 value 108.949157
iter 40 value 105.523564
iter 50 value 105.369176
iter 60 value 105.136563
iter 70 value 103.615190
iter 80 value 101.727626
iter 90 value 99.684098
iter 100 value 99.268829
final value 99.268829
stopped after 100 iterations
Fitting Repeat 2
# weights: 305
initial value 136.864713
iter 10 value 117.899782
iter 20 value 117.894949
iter 30 value 116.352541
iter 40 value 108.547093
iter 50 value 108.538786
iter 60 value 105.364169
iter 70 value 105.361360
iter 80 value 105.360729
iter 90 value 105.149582
iter 100 value 104.973580
final value 104.973580
stopped after 100 iterations
Fitting Repeat 3
# weights: 305
initial value 117.897452
iter 10 value 111.164897
iter 20 value 108.577011
iter 30 value 108.531127
iter 40 value 107.316192
iter 50 value 107.051448
iter 60 value 107.045013
iter 70 value 106.833811
final value 106.828636
converged
Fitting Repeat 4
# weights: 305
initial value 123.742794
iter 10 value 117.895047
iter 20 value 117.826864
iter 30 value 114.735285
iter 40 value 108.538600
iter 50 value 107.197484
iter 60 value 107.191873
iter 70 value 107.167532
final value 107.166521
converged
Fitting Repeat 5
# weights: 305
initial value 124.742103
iter 10 value 117.894470
final value 117.890435
converged
svmRadial
ranger
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls < cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
Setting levels: control = Positive, case = Negative
Setting direction: controls > cases
RUNIT TEST PROTOCOL -- Tue Feb 7 04:45:50 2023
***********************************************
Number of test functions: 8
Number of errors: 0
Number of failures: 0
1 Test Suite :
HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures
Number of test functions: 8
Number of errors: 0
Number of failures: 0
Warning messages:
1: The `.data` argument of `add_column()` must have unique names as of tibble
3.0.0.
ℹ Use `.name_repair = "minimal"`.
ℹ The deprecated feature was likely used in the tibble package.
Please report the issue at <https://github.com/tidyverse/tibble/issues>.
2: `repeats` has no meaning for this resampling method.
3: executing %dopar% sequentially: no parallel backend registered
>
>
>
>
> proc.time()
user system elapsed
53.776 0.735 103.515
HPiP.Rcheck/HPiP-Ex.timings
| name | user | system | elapsed | |
| FSmethod | 36.485 | 0.335 | 36.836 | |
| FreqInteractors | 0.279 | 0.008 | 0.290 | |
| calculateAAC | 0.065 | 0.012 | 0.077 | |
| calculateAutocor | 0.708 | 0.024 | 0.733 | |
| calculateBE | 0.234 | 0.000 | 0.235 | |
| calculateCTDC | 0.13 | 0.00 | 0.13 | |
| calculateCTDD | 0.898 | 0.000 | 0.898 | |
| calculateCTDT | 0.286 | 0.000 | 0.286 | |
| calculateCTriad | 0.442 | 0.004 | 0.446 | |
| calculateDC | 0.145 | 0.004 | 0.149 | |
| calculateF | 0.698 | 0.000 | 0.705 | |
| calculateKSAAP | 0.144 | 0.000 | 0.144 | |
| calculateQD_Sm | 2.258 | 0.000 | 2.258 | |
| calculateTC | 2.356 | 0.044 | 2.400 | |
| calculateTC_Sm | 0.286 | 0.008 | 0.294 | |
| corr_plot | 37.944 | 0.388 | 38.587 | |
| enrichfindP | 0.465 | 0.069 | 38.652 | |
| enrichfind_hp | 0.039 | 0.004 | 1.668 | |
| enrichplot | 0.348 | 0.000 | 0.353 | |
| filter_missing_values | 0.001 | 0.000 | 0.001 | |
| getFASTA | 0.874 | 0.008 | 7.670 | |
| getHPI | 0.001 | 0.000 | 0.001 | |
| get_negativePPI | 0.002 | 0.000 | 0.002 | |
| get_positivePPI | 0 | 0 | 0 | |
| impute_missing_data | 0.002 | 0.000 | 0.002 | |
| plotPPI | 0.076 | 0.004 | 0.102 | |
| pred_ensembel | 18.094 | 0.394 | 17.266 | |
| var_imp | 39.797 | 0.411 | 40.224 | |