Back to Build/check report for BioC 3.17 |
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This page was generated on 2023-02-08 01:15:08 -0000 (Wed, 08 Feb 2023).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
To the developers/maintainers of the HPiP package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
Package 914/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.5.0 (landing page) Matineh Rahmatbakhsh
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
Package: HPiP |
Version: 1.5.0 |
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz |
StartedAt: 2023-02-07 04:39:21 -0000 (Tue, 07 Feb 2023) |
EndedAt: 2023-02-07 04:56:46 -0000 (Tue, 07 Feb 2023) |
EllapsedTime: 1044.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings HPiP_1.5.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck’ * using R Under development (unstable) (2023-01-14 r83615) * using platform: aarch64-unknown-linux-gnu (64-bit) * R was compiled by gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0 * running under: Ubuntu 22.04.1 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.5.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 39.797 0.411 40.224 corr_plot 37.944 0.388 38.587 FSmethod 36.485 0.335 36.836 pred_ensembel 18.094 0.394 17.266 getFASTA 0.874 0.008 7.670 enrichfindP 0.465 0.069 38.652 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... ‘HPiP_tutorial.Rmd’ using ‘UTF-8’... OK NONE * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/home/biocbuild/bbs-3.17-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" Copyright (C) 2023 The R Foundation for Statistical Computing Platform: aarch64-unknown-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 102.580067 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 105.455069 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 100.040780 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.147308 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 108.302037 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 111.886615 iter 10 value 94.467391 iter 10 value 94.467391 iter 10 value 94.467391 final value 94.467391 converged Fitting Repeat 2 # weights: 305 initial value 95.512460 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 102.675893 final value 94.467391 converged Fitting Repeat 4 # weights: 305 initial value 99.584751 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.129159 final value 94.484210 converged Fitting Repeat 1 # weights: 507 initial value 109.033114 final value 94.467391 converged Fitting Repeat 2 # weights: 507 initial value 101.975760 iter 10 value 94.313415 iter 20 value 93.731227 iter 30 value 93.660996 iter 40 value 93.660681 final value 93.660676 converged Fitting Repeat 3 # weights: 507 initial value 106.546611 final value 94.467392 converged Fitting Repeat 4 # weights: 507 initial value 95.101882 iter 10 value 93.287557 iter 20 value 91.593199 final value 91.593023 converged Fitting Repeat 5 # weights: 507 initial value 97.723103 final value 94.467391 converged Fitting Repeat 1 # weights: 103 initial value 103.078580 iter 10 value 94.452743 iter 20 value 93.419572 iter 30 value 90.983681 iter 40 value 89.918193 iter 50 value 88.082171 iter 60 value 86.475484 iter 70 value 86.214770 iter 80 value 85.446262 iter 90 value 84.953816 iter 100 value 84.869313 final value 84.869313 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 96.854862 iter 10 value 92.054439 iter 20 value 86.722721 iter 30 value 85.770267 iter 40 value 85.317514 iter 50 value 84.095205 iter 60 value 82.780322 iter 70 value 82.356253 iter 80 value 82.332043 final value 82.332033 converged Fitting Repeat 3 # weights: 103 initial value 99.101898 iter 10 value 94.363952 iter 20 value 92.195697 iter 30 value 92.025036 iter 40 value 91.958428 iter 50 value 91.927624 iter 60 value 91.380187 iter 70 value 91.329447 final value 91.329417 converged Fitting Repeat 4 # weights: 103 initial value 108.218972 iter 10 value 94.181416 iter 20 value 88.508827 iter 30 value 88.242373 iter 40 value 87.769104 iter 50 value 86.548831 iter 60 value 85.964323 iter 70 value 85.925130 final value 85.924343 converged Fitting Repeat 5 # weights: 103 initial value 115.899032 iter 10 value 94.518955 iter 20 value 94.486985 iter 30 value 94.409043 iter 40 value 88.803109 iter 50 value 85.256059 iter 60 value 84.637275 iter 70 value 83.043736 iter 80 value 81.965836 iter 90 value 81.883091 final value 81.883085 converged Fitting Repeat 1 # weights: 305 initial value 102.382195 iter 10 value 94.656474 iter 20 value 94.127808 iter 30 value 86.276957 iter 40 value 85.173200 iter 50 value 84.637128 iter 60 value 84.388172 iter 70 value 83.453174 iter 80 value 82.399535 iter 90 value 81.854998 iter 100 value 81.445990 final value 81.445990 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.445783 iter 10 value 94.093800 iter 20 value 88.955650 iter 30 value 88.121173 iter 40 value 87.496419 iter 50 value 87.360238 iter 60 value 86.608839 iter 70 value 84.688935 iter 80 value 84.438756 iter 90 value 81.156666 iter 100 value 80.784375 final value 80.784375 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.463097 iter 10 value 94.533951 iter 20 value 88.759529 iter 30 value 86.933495 iter 40 value 84.065050 iter 50 value 81.241812 iter 60 value 80.629918 iter 70 value 80.335059 iter 80 value 80.264144 iter 90 value 80.166509 iter 100 value 80.137248 final value 80.137248 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.412840 iter 10 value 94.630795 iter 20 value 91.933624 iter 30 value 87.382475 iter 40 value 83.938416 iter 50 value 82.698056 iter 60 value 80.864609 iter 70 value 80.792986 iter 80 value 80.615921 iter 90 value 80.464118 iter 100 value 80.040923 final value 80.040923 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 113.156385 iter 10 value 97.667473 iter 20 value 90.234273 iter 30 value 84.237530 iter 40 value 83.046589 iter 50 value 82.330952 iter 60 value 81.450769 iter 70 value 81.235821 iter 80 value 80.933042 iter 90 value 80.703865 iter 100 value 80.024524 final value 80.024524 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 113.771267 iter 10 value 94.600567 iter 20 value 93.083270 iter 30 value 87.993028 iter 40 value 84.636007 iter 50 value 83.704731 iter 60 value 83.113754 iter 70 value 81.562673 iter 80 value 80.651312 iter 90 value 80.471094 iter 100 value 80.372580 final value 80.372580 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.582134 iter 10 value 94.248541 iter 20 value 90.944795 iter 30 value 86.471026 iter 40 value 84.072441 iter 50 value 82.669115 iter 60 value 82.065961 iter 70 value 80.696873 iter 80 value 80.051029 iter 90 value 79.842913 iter 100 value 79.726734 final value 79.726734 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.351566 iter 10 value 99.101325 iter 20 value 87.575047 iter 30 value 85.645644 iter 40 value 84.163711 iter 50 value 82.660134 iter 60 value 82.145937 iter 70 value 82.098220 iter 80 value 81.728610 iter 90 value 81.404317 iter 100 value 80.527191 final value 80.527191 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.487095 iter 10 value 94.816583 iter 20 value 93.999340 iter 30 value 90.291045 iter 40 value 86.733958 iter 50 value 85.992023 iter 60 value 84.009508 iter 70 value 82.247714 iter 80 value 80.922070 iter 90 value 80.077892 iter 100 value 79.826599 final value 79.826599 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 105.412751 iter 10 value 93.332315 iter 20 value 88.362143 iter 30 value 87.296936 iter 40 value 82.373250 iter 50 value 80.680161 iter 60 value 80.098853 iter 70 value 79.769782 iter 80 value 79.596388 iter 90 value 79.449323 iter 100 value 79.396205 final value 79.396205 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.738728 final value 94.485988 converged Fitting Repeat 2 # weights: 103 initial value 102.885277 final value 94.462637 converged Fitting Repeat 3 # weights: 103 initial value 95.593318 final value 94.485868 converged Fitting Repeat 4 # weights: 103 initial value 105.204786 final value 94.485987 converged Fitting Repeat 5 # weights: 103 initial value 103.911949 final value 94.485591 converged Fitting Repeat 1 # weights: 305 initial value 110.619954 iter 10 value 94.489229 iter 20 value 94.484142 iter 30 value 94.467435 final value 94.467417 converged Fitting Repeat 2 # weights: 305 initial value 95.094620 iter 10 value 94.302016 iter 20 value 93.427752 iter 30 value 91.473717 iter 40 value 91.115592 iter 50 value 90.909829 iter 60 value 90.909224 iter 70 value 90.897489 iter 80 value 90.897341 iter 90 value 90.896935 final value 90.896930 converged Fitting Repeat 3 # weights: 305 initial value 107.135443 iter 10 value 94.488579 iter 20 value 94.422838 iter 30 value 87.572447 iter 40 value 86.908543 iter 50 value 84.262722 iter 60 value 84.060339 iter 70 value 84.059955 iter 80 value 82.910737 iter 90 value 82.497394 iter 100 value 82.476842 final value 82.476842 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 95.364164 iter 10 value 94.472519 iter 20 value 93.612077 iter 30 value 85.650995 iter 40 value 83.408541 iter 50 value 83.265682 iter 60 value 83.264835 iter 70 value 83.249075 iter 80 value 82.858876 final value 82.811967 converged Fitting Repeat 5 # weights: 305 initial value 102.651549 iter 10 value 88.383382 iter 20 value 87.490858 iter 30 value 87.484283 iter 40 value 86.443017 iter 50 value 86.162598 iter 60 value 86.151507 iter 70 value 86.147742 iter 80 value 86.147017 iter 90 value 85.943953 iter 100 value 85.804171 final value 85.804171 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 97.798447 iter 10 value 94.492340 iter 20 value 94.481737 iter 30 value 94.467732 iter 40 value 94.374375 iter 50 value 94.134233 iter 60 value 86.716887 iter 70 value 86.314138 iter 80 value 85.630375 iter 90 value 83.628509 iter 100 value 82.154846 final value 82.154846 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 116.091110 iter 10 value 94.492087 iter 20 value 94.474386 iter 30 value 89.890742 iter 40 value 86.081990 iter 50 value 84.273938 iter 60 value 84.260431 final value 84.260232 converged Fitting Repeat 3 # weights: 507 initial value 114.147486 iter 10 value 94.474984 iter 20 value 94.345490 iter 30 value 92.742315 iter 40 value 92.279674 final value 92.277287 converged Fitting Repeat 4 # weights: 507 initial value 119.814650 iter 10 value 94.492317 iter 20 value 94.461235 iter 30 value 88.314521 iter 40 value 85.390144 iter 50 value 84.354353 iter 60 value 84.200259 iter 70 value 84.200076 iter 80 value 84.087259 iter 90 value 82.883517 iter 100 value 82.833612 final value 82.833612 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.227014 iter 10 value 94.492419 iter 20 value 94.484919 iter 30 value 94.389497 iter 40 value 94.304329 iter 50 value 94.068761 iter 60 value 93.865501 iter 70 value 85.055000 iter 80 value 84.288821 iter 90 value 84.050577 iter 100 value 84.046866 final value 84.046866 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.018851 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.698085 iter 10 value 93.772976 final value 93.772973 converged Fitting Repeat 3 # weights: 103 initial value 97.208577 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 96.680277 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 111.267920 final value 94.052434 converged Fitting Repeat 1 # weights: 305 initial value 102.623311 iter 10 value 93.772989 final value 93.772973 converged Fitting Repeat 2 # weights: 305 initial value 97.003686 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 96.890000 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 94.985074 iter 10 value 93.772979 final value 93.772973 converged Fitting Repeat 5 # weights: 305 initial value 95.753768 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 107.731101 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 96.721479 final value 93.772973 converged Fitting Repeat 3 # weights: 507 initial value 108.015752 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 105.397120 iter 10 value 93.772976 final value 93.772973 converged Fitting Repeat 5 # weights: 507 initial value 102.108023 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 105.648677 iter 10 value 94.213500 iter 20 value 85.580748 iter 30 value 82.954373 iter 40 value 82.736389 iter 50 value 82.638876 iter 60 value 82.588022 final value 82.586568 converged Fitting Repeat 2 # weights: 103 initial value 99.243673 iter 10 value 94.489373 iter 20 value 94.066072 iter 30 value 91.701401 iter 40 value 91.416411 iter 50 value 87.272560 iter 60 value 86.763092 iter 70 value 83.127812 iter 80 value 81.649229 iter 90 value 81.598357 iter 100 value 81.524278 final value 81.524278 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 101.996653 iter 10 value 94.836485 iter 20 value 94.488154 iter 30 value 94.029795 iter 40 value 93.982605 iter 50 value 93.436554 iter 60 value 90.003757 iter 70 value 86.663345 iter 80 value 83.424971 iter 90 value 83.043474 iter 100 value 83.037461 final value 83.037461 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.026017 iter 10 value 94.007130 iter 20 value 86.233276 iter 30 value 85.797536 iter 40 value 85.140016 iter 50 value 83.011624 iter 60 value 82.997131 iter 70 value 82.996809 iter 80 value 82.996612 final value 82.996606 converged Fitting Repeat 5 # weights: 103 initial value 97.133446 iter 10 value 94.001214 iter 20 value 93.968296 iter 30 value 87.887752 iter 40 value 83.995743 iter 50 value 83.063818 iter 60 value 82.998829 iter 70 value 82.977623 final value 82.977622 converged Fitting Repeat 1 # weights: 305 initial value 107.945474 iter 10 value 94.546334 iter 20 value 94.432603 iter 30 value 88.670859 iter 40 value 82.828541 iter 50 value 82.651893 iter 60 value 81.755858 iter 70 value 81.451028 iter 80 value 81.390086 iter 90 value 81.219796 iter 100 value 80.623237 final value 80.623237 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.941457 iter 10 value 93.394562 iter 20 value 83.013899 iter 30 value 82.841857 iter 40 value 82.420134 iter 50 value 81.635811 iter 60 value 81.500740 iter 70 value 81.350830 iter 80 value 81.181704 iter 90 value 80.814665 iter 100 value 80.655881 final value 80.655881 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.283447 iter 10 value 94.164959 iter 20 value 92.195260 iter 30 value 85.238774 iter 40 value 83.061907 iter 50 value 82.945333 iter 60 value 82.689397 iter 70 value 82.476626 iter 80 value 82.469179 iter 90 value 82.467717 iter 100 value 81.420035 final value 81.420035 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 113.295891 iter 10 value 94.419104 iter 20 value 93.621698 iter 30 value 86.641584 iter 40 value 84.467120 iter 50 value 82.654603 iter 60 value 82.452560 iter 70 value 82.295356 iter 80 value 81.935320 iter 90 value 80.888930 iter 100 value 80.144979 final value 80.144979 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 108.760589 iter 10 value 94.474666 iter 20 value 89.104283 iter 30 value 83.972361 iter 40 value 82.430146 iter 50 value 80.939728 iter 60 value 80.397489 iter 70 value 80.210325 iter 80 value 80.061793 iter 90 value 79.766578 iter 100 value 79.588286 final value 79.588286 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 133.977359 iter 10 value 95.362971 iter 20 value 94.262979 iter 30 value 89.902291 iter 40 value 88.455923 iter 50 value 87.023402 iter 60 value 83.063961 iter 70 value 81.104074 iter 80 value 80.406235 iter 90 value 79.974809 iter 100 value 79.813533 final value 79.813533 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 119.537629 iter 10 value 93.674556 iter 20 value 90.296005 iter 30 value 89.450592 iter 40 value 86.439248 iter 50 value 83.166382 iter 60 value 82.399703 iter 70 value 82.335969 iter 80 value 82.054601 iter 90 value 81.354965 iter 100 value 80.997333 final value 80.997333 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.427917 iter 10 value 93.513065 iter 20 value 91.558350 iter 30 value 86.037993 iter 40 value 84.111264 iter 50 value 82.924733 iter 60 value 81.283298 iter 70 value 80.252100 iter 80 value 79.676412 iter 90 value 79.431075 iter 100 value 79.341601 final value 79.341601 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.033898 iter 10 value 94.540289 iter 20 value 91.174587 iter 30 value 90.266555 iter 40 value 84.484571 iter 50 value 83.605739 iter 60 value 83.195944 iter 70 value 81.761830 iter 80 value 81.369714 iter 90 value 80.966354 iter 100 value 80.857026 final value 80.857026 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.641683 iter 10 value 94.405515 iter 20 value 91.260353 iter 30 value 84.280100 iter 40 value 83.508314 iter 50 value 82.155362 iter 60 value 81.689621 iter 70 value 81.466647 iter 80 value 81.426013 iter 90 value 81.397290 iter 100 value 81.342848 final value 81.342848 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.977069 final value 94.485825 converged Fitting Repeat 2 # weights: 103 initial value 100.232068 final value 94.486194 converged Fitting Repeat 3 # weights: 103 initial value 95.505756 final value 94.485838 converged Fitting Repeat 4 # weights: 103 initial value 99.281808 iter 10 value 94.486011 iter 20 value 94.200135 iter 30 value 86.959474 iter 40 value 86.956594 iter 50 value 86.956449 iter 60 value 85.593398 iter 70 value 84.861790 iter 80 value 82.397215 final value 81.904198 converged Fitting Repeat 5 # weights: 103 initial value 102.056149 iter 10 value 93.774978 iter 20 value 93.773975 iter 30 value 93.763629 iter 40 value 90.945818 iter 50 value 90.843330 iter 60 value 90.842976 final value 90.842941 converged Fitting Repeat 1 # weights: 305 initial value 99.684971 iter 10 value 94.488556 iter 20 value 93.894340 iter 30 value 93.352162 iter 40 value 93.351924 final value 93.351849 converged Fitting Repeat 2 # weights: 305 initial value 96.716463 iter 10 value 88.993683 iter 20 value 87.926583 iter 30 value 84.506593 iter 40 value 84.486612 iter 50 value 84.093415 iter 60 value 84.087611 iter 70 value 84.085442 final value 84.085283 converged Fitting Repeat 3 # weights: 305 initial value 96.968057 iter 10 value 93.784016 iter 20 value 93.780623 iter 30 value 93.729624 iter 40 value 93.725239 iter 50 value 93.093010 iter 60 value 89.212466 iter 70 value 87.485373 iter 80 value 87.216302 iter 90 value 87.195520 iter 100 value 81.013185 final value 81.013185 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.920780 iter 10 value 93.457071 iter 20 value 93.374551 iter 30 value 93.370513 iter 40 value 93.361209 iter 50 value 93.357535 iter 60 value 93.157674 final value 93.157631 converged Fitting Repeat 5 # weights: 305 initial value 96.595220 iter 10 value 94.488802 iter 20 value 94.452546 iter 30 value 89.950403 iter 40 value 84.676579 iter 50 value 83.809126 final value 83.807636 converged Fitting Repeat 1 # weights: 507 initial value 131.278618 iter 10 value 93.426234 iter 20 value 93.395363 iter 30 value 93.295049 iter 40 value 93.292318 final value 93.291868 converged Fitting Repeat 2 # weights: 507 initial value 109.276277 iter 10 value 84.308244 iter 20 value 84.083400 iter 30 value 84.075777 iter 40 value 84.072612 iter 50 value 84.071964 iter 60 value 84.070967 iter 70 value 83.815084 iter 80 value 83.565416 iter 90 value 83.520311 iter 100 value 83.443909 final value 83.443909 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.291600 iter 10 value 92.401923 iter 20 value 92.160891 iter 30 value 92.007825 iter 40 value 87.455287 iter 50 value 84.103818 iter 60 value 83.965455 iter 70 value 83.957012 iter 80 value 83.910412 iter 90 value 83.904476 iter 100 value 81.875923 final value 81.875923 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 97.162214 iter 10 value 94.491739 iter 20 value 94.196832 iter 30 value 93.339692 iter 40 value 92.427465 iter 50 value 92.408374 iter 60 value 92.122865 final value 92.122766 converged Fitting Repeat 5 # weights: 507 initial value 108.843476 iter 10 value 94.060175 iter 20 value 93.750419 iter 30 value 85.985490 iter 40 value 82.917898 iter 50 value 82.896159 iter 60 value 82.763997 iter 70 value 82.761924 iter 80 value 82.759871 iter 90 value 81.296833 iter 100 value 79.889031 final value 79.889031 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.853786 iter 10 value 85.694112 iter 20 value 84.641278 iter 30 value 84.039107 iter 40 value 84.017630 final value 84.017612 converged Fitting Repeat 2 # weights: 103 initial value 104.119671 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 98.179892 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.160122 final value 94.466823 converged Fitting Repeat 5 # weights: 103 initial value 102.880675 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 98.206232 final value 94.466823 converged Fitting Repeat 2 # weights: 305 initial value 99.139124 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 116.710089 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 113.765247 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 101.989910 iter 10 value 89.275774 iter 20 value 87.446213 iter 30 value 87.378876 iter 40 value 86.354600 iter 50 value 86.298867 iter 60 value 86.298322 final value 86.298282 converged Fitting Repeat 1 # weights: 507 initial value 115.638152 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 99.255263 iter 10 value 94.467447 final value 94.466823 converged Fitting Repeat 3 # weights: 507 initial value 100.003430 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 123.634308 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 97.920088 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 99.256037 iter 10 value 94.573759 iter 20 value 92.352523 iter 30 value 85.645523 iter 40 value 85.291012 iter 50 value 84.752388 iter 60 value 84.204390 final value 84.127255 converged Fitting Repeat 2 # weights: 103 initial value 98.675158 iter 10 value 94.395587 iter 20 value 90.355735 iter 30 value 89.625255 iter 40 value 89.473980 iter 50 value 87.415265 iter 60 value 85.429143 iter 70 value 85.343272 iter 80 value 85.225832 iter 90 value 84.874806 iter 100 value 84.834701 final value 84.834701 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 109.164382 iter 10 value 94.454071 iter 20 value 90.406294 iter 30 value 88.259038 iter 40 value 87.670214 iter 50 value 85.604440 iter 60 value 83.707472 iter 70 value 82.967740 iter 80 value 82.855231 final value 82.855122 converged Fitting Repeat 4 # weights: 103 initial value 103.811415 iter 10 value 94.489445 iter 20 value 87.693914 iter 30 value 85.470402 iter 40 value 84.810353 iter 50 value 84.609912 iter 60 value 84.508608 iter 70 value 84.398292 iter 80 value 84.105518 final value 84.104459 converged Fitting Repeat 5 # weights: 103 initial value 99.400828 iter 10 value 91.012979 iter 20 value 87.845110 iter 30 value 83.976298 iter 40 value 83.799893 iter 50 value 83.681816 iter 60 value 83.566170 iter 70 value 83.346848 iter 80 value 83.032866 iter 90 value 82.680686 iter 100 value 82.653143 final value 82.653143 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 105.351833 iter 10 value 94.470420 iter 20 value 86.926837 iter 30 value 85.420528 iter 40 value 84.915495 iter 50 value 83.143268 iter 60 value 82.295494 iter 70 value 82.042159 iter 80 value 81.890993 iter 90 value 81.768299 iter 100 value 81.683674 final value 81.683674 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 115.931538 iter 10 value 94.614042 iter 20 value 89.096515 iter 30 value 87.568536 iter 40 value 87.191006 iter 50 value 85.932623 iter 60 value 85.220863 iter 70 value 85.115646 iter 80 value 85.097842 iter 90 value 85.047084 iter 100 value 84.870314 final value 84.870314 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.109006 iter 10 value 94.774157 iter 20 value 94.473419 iter 30 value 88.733485 iter 40 value 87.286892 iter 50 value 84.075677 iter 60 value 82.928079 iter 70 value 82.572231 iter 80 value 82.037330 iter 90 value 81.759516 iter 100 value 81.621957 final value 81.621957 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 121.204263 iter 10 value 94.494575 iter 20 value 90.125117 iter 30 value 87.311114 iter 40 value 85.560687 iter 50 value 84.983745 iter 60 value 84.714937 iter 70 value 82.931642 iter 80 value 82.282474 iter 90 value 82.067832 iter 100 value 81.970521 final value 81.970521 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.981140 iter 10 value 90.905863 iter 20 value 89.815446 iter 30 value 89.306025 iter 40 value 88.004786 iter 50 value 86.784441 iter 60 value 85.494154 iter 70 value 85.038868 iter 80 value 84.981598 iter 90 value 84.769152 iter 100 value 83.363286 final value 83.363286 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.326220 iter 10 value 94.468409 iter 20 value 86.855815 iter 30 value 85.501025 iter 40 value 84.724489 iter 50 value 83.806901 iter 60 value 83.044296 iter 70 value 82.604295 iter 80 value 82.224882 iter 90 value 81.850105 iter 100 value 81.784517 final value 81.784517 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.179708 iter 10 value 94.502424 iter 20 value 89.009305 iter 30 value 86.448513 iter 40 value 86.082000 iter 50 value 85.455370 iter 60 value 84.361139 iter 70 value 83.871238 iter 80 value 82.868502 iter 90 value 82.449796 iter 100 value 82.317854 final value 82.317854 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.633859 iter 10 value 94.139234 iter 20 value 86.111110 iter 30 value 85.477103 iter 40 value 85.284762 iter 50 value 83.654283 iter 60 value 82.455270 iter 70 value 82.114920 iter 80 value 81.973312 iter 90 value 81.552731 iter 100 value 81.244317 final value 81.244317 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 111.807361 iter 10 value 92.410115 iter 20 value 87.626690 iter 30 value 86.396355 iter 40 value 86.131639 iter 50 value 85.464540 iter 60 value 85.236713 iter 70 value 84.658076 iter 80 value 84.303110 iter 90 value 83.033151 iter 100 value 82.291008 final value 82.291008 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 119.282507 iter 10 value 94.752001 iter 20 value 87.114660 iter 30 value 85.581788 iter 40 value 85.000274 iter 50 value 83.654380 iter 60 value 82.679534 iter 70 value 82.477495 iter 80 value 82.191204 iter 90 value 81.533550 iter 100 value 81.448475 final value 81.448475 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.720721 final value 94.485735 converged Fitting Repeat 2 # weights: 103 initial value 107.450969 iter 10 value 94.486056 iter 20 value 94.484228 iter 30 value 92.707169 iter 40 value 88.963325 iter 50 value 88.923982 final value 88.923867 converged Fitting Repeat 3 # weights: 103 initial value 96.075354 final value 94.468478 converged Fitting Repeat 4 # weights: 103 initial value 99.299556 iter 10 value 94.486016 iter 20 value 94.375540 iter 30 value 92.247896 iter 40 value 92.238634 iter 50 value 92.238271 iter 50 value 92.238270 iter 50 value 92.238270 final value 92.238270 converged Fitting Repeat 5 # weights: 103 initial value 101.670782 final value 94.468240 converged Fitting Repeat 1 # weights: 305 initial value 96.481617 iter 10 value 93.161448 iter 20 value 88.867697 iter 30 value 88.864601 iter 40 value 88.861960 iter 50 value 88.596536 iter 60 value 88.561318 iter 70 value 86.333394 iter 80 value 85.758041 iter 90 value 85.753299 iter 100 value 85.752624 final value 85.752624 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.502635 iter 10 value 94.472023 iter 20 value 94.467341 final value 94.467152 converged Fitting Repeat 3 # weights: 305 initial value 108.615005 iter 10 value 94.611287 iter 20 value 94.603005 iter 30 value 94.415697 iter 40 value 92.014571 iter 50 value 91.926206 iter 60 value 85.289895 iter 70 value 84.765138 iter 80 value 84.479295 iter 90 value 84.278690 iter 100 value 84.239069 final value 84.239069 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.359647 iter 10 value 94.489152 iter 20 value 94.483773 iter 30 value 94.151756 iter 40 value 88.566340 iter 50 value 88.526672 iter 60 value 87.047101 iter 70 value 86.742035 final value 86.709926 converged Fitting Repeat 5 # weights: 305 initial value 99.310478 iter 10 value 94.488605 iter 20 value 94.037435 iter 30 value 92.221704 iter 40 value 91.962138 iter 50 value 91.909669 iter 60 value 84.194229 iter 70 value 84.010957 iter 80 value 83.896987 iter 90 value 83.881339 iter 100 value 82.539153 final value 82.539153 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 135.167413 iter 10 value 89.883403 iter 20 value 88.788534 iter 30 value 85.837995 iter 40 value 85.280924 iter 50 value 84.273608 iter 60 value 83.777851 iter 70 value 83.553835 iter 80 value 83.456698 final value 83.455607 converged Fitting Repeat 2 # weights: 507 initial value 112.511115 iter 10 value 94.475345 iter 20 value 94.470617 iter 30 value 94.469121 iter 40 value 94.466912 iter 50 value 94.281448 iter 60 value 89.277050 iter 70 value 84.700133 iter 80 value 84.115160 iter 90 value 82.753170 iter 100 value 81.515605 final value 81.515605 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.309814 iter 10 value 94.492430 iter 20 value 94.475107 iter 30 value 94.405445 iter 40 value 86.214137 iter 50 value 84.449407 iter 60 value 83.360855 iter 70 value 83.100122 iter 80 value 83.073764 iter 90 value 83.065076 iter 100 value 83.055940 final value 83.055940 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 127.778224 iter 10 value 90.887369 iter 20 value 90.689790 iter 30 value 89.919194 iter 40 value 89.055478 iter 50 value 88.906695 iter 60 value 88.887344 final value 88.886927 converged Fitting Repeat 5 # weights: 507 initial value 130.066304 iter 10 value 94.492686 iter 20 value 94.452948 iter 30 value 94.208581 iter 40 value 89.421063 iter 50 value 88.515054 iter 60 value 82.421892 iter 70 value 81.927751 iter 80 value 81.907505 iter 90 value 81.821755 iter 100 value 81.757032 final value 81.757032 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 94.775832 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 103.024553 iter 10 value 86.807207 iter 20 value 86.648320 iter 30 value 86.648245 final value 86.648239 converged Fitting Repeat 3 # weights: 103 initial value 95.390135 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 98.503528 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.071117 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 107.204977 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 105.335704 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 94.306720 iter 10 value 93.865571 final value 93.798554 converged Fitting Repeat 4 # weights: 305 initial value 122.564442 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 94.912146 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 105.813421 iter 10 value 92.043772 iter 20 value 86.046089 final value 86.014293 converged Fitting Repeat 2 # weights: 507 initial value 107.288832 iter 10 value 84.393713 iter 20 value 81.247073 iter 30 value 80.954829 iter 40 value 80.841964 final value 80.841956 converged Fitting Repeat 3 # weights: 507 initial value 99.243812 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 97.978916 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 109.407502 final value 94.032967 converged Fitting Repeat 1 # weights: 103 initial value 103.629511 iter 10 value 94.018759 iter 20 value 85.973603 iter 30 value 84.520339 iter 40 value 84.188129 iter 50 value 82.892089 iter 60 value 82.362861 iter 70 value 82.244081 iter 80 value 81.680676 iter 90 value 79.999802 iter 100 value 79.987103 final value 79.987103 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 95.795975 iter 10 value 94.057804 iter 20 value 92.963192 iter 30 value 85.097224 iter 40 value 82.673692 iter 50 value 81.916891 iter 60 value 81.127361 iter 70 value 80.969613 iter 80 value 80.588387 iter 90 value 80.357984 iter 100 value 80.050010 final value 80.050010 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 105.351267 iter 10 value 94.055873 iter 20 value 93.960336 iter 30 value 91.936096 iter 40 value 90.520909 iter 50 value 86.271925 iter 60 value 84.965137 iter 70 value 84.290017 iter 80 value 83.910160 iter 90 value 83.603586 iter 100 value 83.048738 final value 83.048738 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.264198 iter 10 value 94.060353 iter 20 value 94.055984 iter 30 value 93.606699 iter 40 value 91.447254 iter 50 value 87.347604 iter 60 value 86.444100 iter 70 value 85.911055 iter 80 value 85.881092 iter 90 value 85.863422 iter 100 value 85.665621 final value 85.665621 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.750900 iter 10 value 94.011163 iter 20 value 93.028933 iter 30 value 86.218534 iter 40 value 84.042975 iter 50 value 83.610196 iter 60 value 83.008387 iter 70 value 82.897052 iter 80 value 82.887816 iter 80 value 82.887815 iter 80 value 82.887815 final value 82.887815 converged Fitting Repeat 1 # weights: 305 initial value 104.447086 iter 10 value 94.376705 iter 20 value 91.684939 iter 30 value 89.843565 iter 40 value 88.037475 iter 50 value 84.806822 iter 60 value 83.499523 iter 70 value 81.266869 iter 80 value 80.491585 iter 90 value 80.086958 iter 100 value 80.032816 final value 80.032816 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 107.231509 iter 10 value 94.059549 iter 20 value 93.871635 iter 30 value 93.821448 iter 40 value 87.322331 iter 50 value 85.082247 iter 60 value 84.093772 iter 70 value 80.327241 iter 80 value 79.634868 iter 90 value 79.346809 iter 100 value 79.276236 final value 79.276236 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.001871 iter 10 value 93.928294 iter 20 value 90.472226 iter 30 value 85.333784 iter 40 value 82.472444 iter 50 value 81.168836 iter 60 value 80.224848 iter 70 value 79.214874 iter 80 value 78.981282 iter 90 value 78.933910 iter 100 value 78.742338 final value 78.742338 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.653358 iter 10 value 92.786553 iter 20 value 91.050049 iter 30 value 90.871468 iter 40 value 90.615271 iter 50 value 84.068948 iter 60 value 82.283744 iter 70 value 82.144711 iter 80 value 81.947378 iter 90 value 81.861562 iter 100 value 81.632337 final value 81.632337 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 125.243154 iter 10 value 94.022914 iter 20 value 87.030405 iter 30 value 84.629998 iter 40 value 83.943968 iter 50 value 83.641106 iter 60 value 83.104189 iter 70 value 82.960267 iter 80 value 80.626260 iter 90 value 78.849668 iter 100 value 78.694936 final value 78.694936 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.391763 iter 10 value 94.780036 iter 20 value 94.074789 iter 30 value 92.034113 iter 40 value 91.232481 iter 50 value 86.697444 iter 60 value 82.058670 iter 70 value 79.819029 iter 80 value 79.003083 iter 90 value 78.770226 iter 100 value 78.539708 final value 78.539708 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 146.193067 iter 10 value 93.851197 iter 20 value 84.930742 iter 30 value 84.517438 iter 40 value 80.678037 iter 50 value 79.883319 iter 60 value 79.727477 iter 70 value 79.567788 iter 80 value 79.483995 iter 90 value 79.282488 iter 100 value 78.832851 final value 78.832851 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.920712 iter 10 value 95.094056 iter 20 value 90.532370 iter 30 value 82.546740 iter 40 value 79.951860 iter 50 value 79.228292 iter 60 value 78.925869 iter 70 value 78.414576 iter 80 value 78.277667 iter 90 value 78.100192 iter 100 value 77.996971 final value 77.996971 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 102.912583 iter 10 value 94.209085 iter 20 value 93.966796 iter 30 value 92.348727 iter 40 value 85.593134 iter 50 value 85.277780 iter 60 value 83.179750 iter 70 value 80.794858 iter 80 value 79.300687 iter 90 value 78.493649 iter 100 value 78.226858 final value 78.226858 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.757319 iter 10 value 94.671648 iter 20 value 92.436132 iter 30 value 86.501369 iter 40 value 84.854316 iter 50 value 82.210347 iter 60 value 80.966333 iter 70 value 80.383889 iter 80 value 80.158622 iter 90 value 79.837170 iter 100 value 79.596863 final value 79.596863 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.952388 iter 10 value 94.073027 iter 20 value 94.053371 final value 94.052914 converged Fitting Repeat 2 # weights: 103 initial value 103.413131 final value 94.054632 converged Fitting Repeat 3 # weights: 103 initial value 96.333255 iter 10 value 94.054645 iter 20 value 94.052912 iter 20 value 94.052912 final value 94.052912 converged Fitting Repeat 4 # weights: 103 initial value 100.022369 final value 94.054634 converged Fitting Repeat 5 # weights: 103 initial value 99.981297 final value 94.054495 converged Fitting Repeat 1 # weights: 305 initial value 100.005054 iter 10 value 94.057626 iter 20 value 94.052280 iter 30 value 86.275313 iter 40 value 86.173891 iter 50 value 86.167366 iter 60 value 83.039092 iter 70 value 83.038495 iter 80 value 82.940608 iter 90 value 82.910338 final value 82.905177 converged Fitting Repeat 2 # weights: 305 initial value 95.273942 iter 10 value 94.057240 iter 20 value 91.721153 iter 30 value 83.102453 iter 40 value 83.006658 iter 50 value 82.838504 iter 60 value 82.834497 final value 82.834421 converged Fitting Repeat 3 # weights: 305 initial value 99.648133 iter 10 value 94.057484 iter 20 value 93.653931 iter 30 value 86.249551 iter 40 value 84.866087 iter 50 value 84.568992 final value 84.568574 converged Fitting Repeat 4 # weights: 305 initial value 96.234531 iter 10 value 94.037817 iter 20 value 94.033284 final value 94.033036 converged Fitting Repeat 5 # weights: 305 initial value 108.475237 iter 10 value 94.057724 iter 20 value 94.053093 iter 30 value 88.942245 iter 40 value 85.251145 iter 50 value 85.247255 iter 60 value 84.944241 iter 70 value 84.680263 iter 80 value 84.678985 final value 84.676838 converged Fitting Repeat 1 # weights: 507 initial value 96.162540 iter 10 value 94.061147 iter 20 value 94.048464 iter 30 value 91.619765 iter 40 value 91.616655 iter 50 value 91.611997 iter 60 value 91.089223 final value 91.086541 converged Fitting Repeat 2 # weights: 507 initial value 101.929143 iter 10 value 94.040816 iter 20 value 94.033808 iter 30 value 93.456167 iter 40 value 92.262893 final value 92.262771 converged Fitting Repeat 3 # weights: 507 initial value 112.436922 iter 10 value 93.636951 iter 20 value 93.636253 iter 30 value 93.634241 iter 40 value 86.227900 iter 50 value 86.157331 iter 60 value 83.045888 iter 70 value 82.870814 iter 80 value 82.870595 iter 90 value 82.448298 iter 100 value 81.022527 final value 81.022527 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.202017 iter 10 value 91.017532 iter 20 value 91.006513 iter 30 value 90.885368 iter 40 value 90.703453 iter 50 value 90.701703 iter 60 value 90.691637 iter 70 value 90.685969 iter 80 value 90.366405 iter 90 value 89.932403 iter 100 value 89.549579 final value 89.549579 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.002225 iter 10 value 89.372952 iter 20 value 82.622477 iter 30 value 81.766480 iter 40 value 81.322304 final value 81.321808 converged Fitting Repeat 1 # weights: 103 initial value 94.130305 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 106.426347 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 96.407950 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 103.886393 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.372690 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 109.952481 iter 10 value 87.218311 iter 20 value 85.070764 iter 30 value 84.979559 iter 40 value 84.972292 final value 84.972265 converged Fitting Repeat 2 # weights: 305 initial value 116.962460 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 127.247869 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 95.540229 iter 10 value 93.401960 iter 20 value 93.352243 iter 30 value 93.343375 final value 93.343341 converged Fitting Repeat 5 # weights: 305 initial value 114.244768 iter 10 value 88.855300 iter 20 value 87.698470 iter 30 value 87.602294 iter 40 value 87.565479 iter 50 value 87.563021 final value 87.562999 converged Fitting Repeat 1 # weights: 507 initial value 94.720395 final value 93.671508 converged Fitting Repeat 2 # weights: 507 initial value 101.002159 final value 93.900000 converged Fitting Repeat 3 # weights: 507 initial value 119.681026 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 106.808593 iter 10 value 93.361941 iter 20 value 93.109854 iter 30 value 92.985556 iter 40 value 92.985080 iter 40 value 92.985080 final value 92.985080 converged Fitting Repeat 5 # weights: 507 initial value 99.970618 iter 10 value 92.170929 iter 20 value 89.758758 iter 30 value 89.391315 iter 40 value 89.263987 iter 40 value 89.263986 iter 40 value 89.263986 final value 89.263986 converged Fitting Repeat 1 # weights: 103 initial value 102.178423 iter 10 value 94.032558 iter 20 value 92.647483 iter 30 value 92.364462 iter 40 value 88.309076 iter 50 value 87.379825 iter 60 value 86.902763 iter 70 value 86.848204 iter 80 value 83.191986 iter 90 value 82.990033 iter 100 value 82.760746 final value 82.760746 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 111.208707 iter 10 value 93.112905 iter 20 value 85.994363 iter 30 value 84.708245 iter 40 value 84.239453 iter 50 value 83.899271 iter 60 value 83.455355 iter 70 value 83.399355 iter 80 value 82.702284 iter 90 value 81.671060 iter 100 value 81.660818 final value 81.660818 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.304081 iter 10 value 94.059522 iter 20 value 93.838539 iter 30 value 93.443247 iter 40 value 93.094973 iter 50 value 87.251102 iter 60 value 86.883498 iter 70 value 85.479678 iter 80 value 85.017435 iter 90 value 84.148198 iter 100 value 82.417549 final value 82.417549 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 98.096385 iter 10 value 94.063566 iter 20 value 85.842001 iter 30 value 85.104304 iter 40 value 84.055348 iter 50 value 83.885710 iter 60 value 83.856124 final value 83.855693 converged Fitting Repeat 5 # weights: 103 initial value 97.590449 iter 10 value 94.028961 iter 20 value 92.254652 iter 30 value 87.796635 iter 40 value 86.048041 iter 50 value 85.090760 iter 60 value 83.907856 iter 70 value 82.994199 iter 80 value 82.114601 iter 90 value 82.052728 iter 100 value 81.753649 final value 81.753649 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 109.145530 iter 10 value 94.077697 iter 20 value 94.011506 iter 30 value 87.209955 iter 40 value 84.290945 iter 50 value 83.602781 iter 60 value 81.954807 iter 70 value 80.891948 iter 80 value 80.624082 iter 90 value 80.435168 iter 100 value 80.241280 final value 80.241280 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.528046 iter 10 value 85.602452 iter 20 value 83.598649 iter 30 value 81.986706 iter 40 value 81.454919 iter 50 value 80.894694 iter 60 value 80.779002 iter 70 value 80.690688 iter 80 value 80.666366 iter 90 value 80.643166 iter 100 value 80.589974 final value 80.589974 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 111.570082 iter 10 value 94.056306 iter 20 value 91.857367 iter 30 value 85.072112 iter 40 value 84.512244 iter 50 value 84.009725 iter 60 value 82.637308 iter 70 value 81.178917 iter 80 value 80.891789 iter 90 value 80.366848 iter 100 value 80.099392 final value 80.099392 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 115.135123 iter 10 value 94.190263 iter 20 value 93.508693 iter 30 value 92.244867 iter 40 value 89.175379 iter 50 value 84.675885 iter 60 value 82.032941 iter 70 value 81.159433 iter 80 value 80.819226 iter 90 value 80.449820 iter 100 value 80.276420 final value 80.276420 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.876441 iter 10 value 93.984558 iter 20 value 89.843302 iter 30 value 86.062478 iter 40 value 85.041445 iter 50 value 83.458733 iter 60 value 82.767506 iter 70 value 82.117761 iter 80 value 80.971011 iter 90 value 80.702532 iter 100 value 80.571526 final value 80.571526 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 131.098674 iter 10 value 93.759737 iter 20 value 90.398301 iter 30 value 86.609253 iter 40 value 83.174241 iter 50 value 82.213519 iter 60 value 81.535678 iter 70 value 80.980243 iter 80 value 80.700736 iter 90 value 80.546646 iter 100 value 80.471589 final value 80.471589 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 107.097432 iter 10 value 92.701314 iter 20 value 85.612964 iter 30 value 84.342230 iter 40 value 83.919931 iter 50 value 83.320975 iter 60 value 83.081837 iter 70 value 83.021032 iter 80 value 82.976226 iter 90 value 82.623012 iter 100 value 81.585856 final value 81.585856 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 144.436818 iter 10 value 107.143922 iter 20 value 94.718927 iter 30 value 89.937987 iter 40 value 87.595064 iter 50 value 86.751725 iter 60 value 84.735652 iter 70 value 84.133567 iter 80 value 83.482038 iter 90 value 82.215867 iter 100 value 80.910394 final value 80.910394 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 112.601815 iter 10 value 94.294970 iter 20 value 93.781548 iter 30 value 90.987044 iter 40 value 89.304048 iter 50 value 86.029149 iter 60 value 84.631769 iter 70 value 83.043599 iter 80 value 81.300115 iter 90 value 80.513541 iter 100 value 80.282077 final value 80.282077 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 131.930209 iter 10 value 94.184661 iter 20 value 92.929943 iter 30 value 88.992843 iter 40 value 86.527116 iter 50 value 85.765961 iter 60 value 85.363124 iter 70 value 85.276577 iter 80 value 83.944954 iter 90 value 83.707869 iter 100 value 82.690513 final value 82.690513 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 105.539166 final value 94.054553 converged Fitting Repeat 2 # weights: 103 initial value 108.627600 final value 94.055494 converged Fitting Repeat 3 # weights: 103 initial value 97.232398 final value 94.054406 converged Fitting Repeat 4 # weights: 103 initial value 94.135836 final value 94.054625 converged Fitting Repeat 5 # weights: 103 initial value 100.302517 final value 94.054758 converged Fitting Repeat 1 # weights: 305 initial value 98.720220 iter 10 value 94.061835 iter 20 value 94.017322 iter 30 value 93.581108 iter 40 value 93.578467 iter 50 value 93.552701 iter 60 value 92.245580 iter 70 value 85.029752 iter 80 value 83.138382 iter 90 value 83.012308 final value 83.012098 converged Fitting Repeat 2 # weights: 305 initial value 97.772908 iter 10 value 94.057796 iter 20 value 94.027495 iter 30 value 93.584179 iter 40 value 93.583651 iter 50 value 93.582954 final value 93.582852 converged Fitting Repeat 3 # weights: 305 initial value 104.797917 iter 10 value 93.580191 iter 20 value 93.577595 iter 30 value 90.911295 iter 40 value 84.335401 iter 50 value 84.204283 iter 60 value 83.526961 iter 70 value 83.085009 iter 70 value 83.085008 iter 70 value 83.085008 final value 83.085008 converged Fitting Repeat 4 # weights: 305 initial value 104.301973 iter 10 value 93.587642 iter 20 value 93.544367 iter 30 value 92.073315 iter 40 value 85.520370 iter 50 value 85.192956 iter 60 value 84.998037 final value 84.965497 converged Fitting Repeat 5 # weights: 305 initial value 106.139556 iter 10 value 94.055772 iter 20 value 94.045689 final value 93.602928 converged Fitting Repeat 1 # weights: 507 initial value 99.035296 iter 10 value 93.591388 iter 20 value 93.585707 iter 30 value 93.579513 iter 40 value 93.459556 iter 50 value 93.330764 iter 60 value 93.330408 final value 93.330388 converged Fitting Repeat 2 # weights: 507 initial value 95.458544 iter 10 value 94.059910 iter 20 value 93.858574 iter 30 value 89.098861 iter 40 value 88.953889 iter 50 value 88.899434 iter 60 value 88.888344 iter 70 value 86.198232 iter 80 value 86.118747 iter 90 value 86.113681 iter 100 value 84.849727 final value 84.849727 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.766256 iter 10 value 94.061388 iter 20 value 94.018031 iter 30 value 91.050572 iter 40 value 84.053781 iter 50 value 82.877452 iter 60 value 82.805163 iter 70 value 82.409626 iter 80 value 82.355969 final value 82.355911 converged Fitting Repeat 4 # weights: 507 initial value 108.738493 iter 10 value 94.059346 iter 20 value 91.888297 iter 30 value 89.807243 iter 40 value 85.298742 iter 50 value 85.270558 iter 60 value 84.772162 iter 70 value 84.766265 iter 80 value 84.765094 iter 90 value 84.383057 iter 100 value 84.110253 final value 84.110253 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.600593 iter 10 value 94.060658 iter 20 value 94.053244 iter 30 value 94.052913 iter 30 value 94.052912 iter 30 value 94.052912 final value 94.052912 converged Fitting Repeat 1 # weights: 305 initial value 135.944876 iter 10 value 117.895191 iter 20 value 117.862454 iter 30 value 108.949157 iter 40 value 105.523564 iter 50 value 105.369176 iter 60 value 105.136563 iter 70 value 103.615190 iter 80 value 101.727626 iter 90 value 99.684098 iter 100 value 99.268829 final value 99.268829 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 136.864713 iter 10 value 117.899782 iter 20 value 117.894949 iter 30 value 116.352541 iter 40 value 108.547093 iter 50 value 108.538786 iter 60 value 105.364169 iter 70 value 105.361360 iter 80 value 105.360729 iter 90 value 105.149582 iter 100 value 104.973580 final value 104.973580 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 117.897452 iter 10 value 111.164897 iter 20 value 108.577011 iter 30 value 108.531127 iter 40 value 107.316192 iter 50 value 107.051448 iter 60 value 107.045013 iter 70 value 106.833811 final value 106.828636 converged Fitting Repeat 4 # weights: 305 initial value 123.742794 iter 10 value 117.895047 iter 20 value 117.826864 iter 30 value 114.735285 iter 40 value 108.538600 iter 50 value 107.197484 iter 60 value 107.191873 iter 70 value 107.167532 final value 107.166521 converged Fitting Repeat 5 # weights: 305 initial value 124.742103 iter 10 value 117.894470 final value 117.890435 converged svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Tue Feb 7 04:45:50 2023 *********************************************** Number of test functions: 8 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 8 test functions, 0 errors, 0 failures Number of test functions: 8 Number of errors: 0 Number of failures: 0 Warning messages: 1: The `.data` argument of `add_column()` must have unique names as of tibble 3.0.0. ℹ Use `.name_repair = "minimal"`. ℹ The deprecated feature was likely used in the tibble package. Please report the issue at <https://github.com/tidyverse/tibble/issues>. 2: `repeats` has no meaning for this resampling method. 3: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 53.776 0.735 103.515
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 36.485 | 0.335 | 36.836 | |
FreqInteractors | 0.279 | 0.008 | 0.290 | |
calculateAAC | 0.065 | 0.012 | 0.077 | |
calculateAutocor | 0.708 | 0.024 | 0.733 | |
calculateBE | 0.234 | 0.000 | 0.235 | |
calculateCTDC | 0.13 | 0.00 | 0.13 | |
calculateCTDD | 0.898 | 0.000 | 0.898 | |
calculateCTDT | 0.286 | 0.000 | 0.286 | |
calculateCTriad | 0.442 | 0.004 | 0.446 | |
calculateDC | 0.145 | 0.004 | 0.149 | |
calculateF | 0.698 | 0.000 | 0.705 | |
calculateKSAAP | 0.144 | 0.000 | 0.144 | |
calculateQD_Sm | 2.258 | 0.000 | 2.258 | |
calculateTC | 2.356 | 0.044 | 2.400 | |
calculateTC_Sm | 0.286 | 0.008 | 0.294 | |
corr_plot | 37.944 | 0.388 | 38.587 | |
enrichfindP | 0.465 | 0.069 | 38.652 | |
enrichfind_hp | 0.039 | 0.004 | 1.668 | |
enrichplot | 0.348 | 0.000 | 0.353 | |
filter_missing_values | 0.001 | 0.000 | 0.001 | |
getFASTA | 0.874 | 0.008 | 7.670 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.076 | 0.004 | 0.102 | |
pred_ensembel | 18.094 | 0.394 | 17.266 | |
var_imp | 39.797 | 0.411 | 40.224 | |