| Back to Build/check report for BioC 3.17 | 
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This page was generated on 2023-02-08 01:15:13 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the MetaboCoreUtils package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/MetaboCoreUtils.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1128/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| MetaboCoreUtils 1.7.0  (landing page) Johannes Rainer 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: MetaboCoreUtils | 
| Version: 1.7.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MetaboCoreUtils.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MetaboCoreUtils_1.7.0.tar.gz | 
| StartedAt: 2023-02-07 07:22:35 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 07:23:31 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 56.1 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: MetaboCoreUtils.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:MetaboCoreUtils.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings MetaboCoreUtils_1.7.0.tar.gz
###
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##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/MetaboCoreUtils.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘MetaboCoreUtils/DESCRIPTION’ ... OK
* this is package ‘MetaboCoreUtils’ version ‘1.7.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MetaboCoreUtils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘MetaboCoreUtils.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
MetaboCoreUtils.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL MetaboCoreUtils ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘MetaboCoreUtils’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (MetaboCoreUtils)
MetaboCoreUtils.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library("testthat")
> 
> test_check("MetaboCoreUtils")
Loading required package: MetaboCoreUtils
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 174 ]
> 
> proc.time()
   user  system elapsed 
  2.990   0.117   3.189 
MetaboCoreUtils.Rcheck/MetaboCoreUtils-Ex.timings
| name | user | system | elapsed | |
| addElements | 0.002 | 0.000 | 0.002 | |
| adductFormula | 0.003 | 0.004 | 0.007 | |
| adductNames | 0.001 | 0.000 | 0.001 | |
| calculateKendrickMass | 0.000 | 0.000 | 0.001 | |
| calculateMass | 0.002 | 0.000 | 0.002 | |
| containsElements | 0.001 | 0.000 | 0.001 | |
| convertMtime | 0 | 0 | 0 | |
| correctRindex | 0.000 | 0.001 | 0.001 | |
| countElements | 0.000 | 0.001 | 0.001 | |
| formula2mz | 0.004 | 0.002 | 0.006 | |
| indexRtime | 0.002 | 0.000 | 0.002 | |
| internalStandardMixNames | 0.001 | 0.000 | 0.001 | |
| internalStandards | 0.016 | 0.000 | 0.019 | |
| isotopicSubstitutionMatrix | 0 | 0 | 0 | |
| isotopologues | 0.014 | 0.000 | 0.028 | |
| mass2mz | 0.002 | 0.000 | 0.002 | |
| multiplyElements | 0.001 | 0.000 | 0.001 | |
| mz2mass | 0.002 | 0.000 | 0.002 | |
| pasteElements | 0 | 0 | 0 | |
| standardizeFormula | 0.000 | 0.000 | 0.001 | |
| subtractElements | 0.001 | 0.000 | 0.001 | |