| Back to Build/check report for BioC 3.17 | 
  | 
This page was generated on 2023-02-08 01:15:17 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the NoRCE package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NoRCE.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1347/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| NoRCE 1.11.0  (landing page) Gulden Olgun 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: NoRCE | 
| Version: 1.11.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:NoRCE.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings NoRCE_1.11.0.tar.gz | 
| StartedAt: 2023-02-07 09:56:24 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 10:02:02 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 337.5 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: NoRCE.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:NoRCE.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings NoRCE_1.11.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/NoRCE.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘NoRCE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘NoRCE’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘NoRCE’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) createNetwork.Rd:27: Escaped LaTeX specials: \& \&
checkRd: (-1) createNetwork.Rd:28: Escaped LaTeX specials: \&
checkRd: (-1) createNetwork.Rd:29: Escaped LaTeX specials: \&
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘NoRCE.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/NoRCE.Rcheck/00check.log’
for details.
NoRCE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL NoRCE ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘NoRCE’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (NoRCE)
NoRCE.Rcheck/tests/testthat.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.
> library(testthat)
> library(NoRCE)
> 
> test_check("NoRCE")
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ]
> 
> proc.time()
   user  system elapsed 
 14.547   0.430  16.509 
NoRCE.Rcheck/NoRCE-Ex.timings
| name | user | system | elapsed | |
| KeggEnrichment | 0.001 | 0.000 | 0.000 | |
| assembly | 0 | 0 | 0 | |
| brain_disorder_ncRNA | 0.003 | 0.000 | 0.002 | |
| brain_mirna | 0.001 | 0.000 | 0.001 | |
| breastmRNA | 0.000 | 0.001 | 0.001 | |
| calculateCorr | 0.000 | 0.001 | 0.000 | |
| convertGeneID | 0 | 0 | 0 | |
| extractBiotype | 0 | 0 | 0 | |
| filterBiotype | 0 | 0 | 0 | |
| geneGOEnricher | 0 | 0 | 0 | |
| genePathwayEnricher | 0.001 | 0.000 | 0.000 | |
| geneRegionGOEnricher | 0 | 0 | 0 | |
| geneRegionPathwayEnricher | 0 | 0 | 0 | |
| getGoDag | 0.001 | 0.000 | 0.000 | |
| getKeggDiagram | 0 | 0 | 0 | |
| getNearToExon | 0 | 0 | 0 | |
| getNearToIntron | 0.000 | 0.001 | 0.000 | |
| getReactomeDiagram | 0 | 0 | 0 | |
| getTADOverlap | 0 | 0 | 0 | |
| getUCSC | 0.000 | 0.001 | 0.000 | |
| goEnrichment | 0 | 0 | 0 | |
| listTAD | 0 | 0 | 0 | |
| mirna | 0.001 | 0.000 | 0.001 | |
| mirnaGOEnricher | 0 | 0 | 0 | |
| mirnaPathwayEnricher | 0.000 | 0.000 | 0.001 | |
| mirnaRegionGOEnricher | 0 | 0 | 0 | |
| mirnaRegionPathwayEnricher | 0 | 0 | 0 | |
| mrna | 0.001 | 0.000 | 0.001 | |
| ncRegion | 0.001 | 0.000 | 0.001 | |
| predictmiTargets | 0.000 | 0.000 | 0.001 | |
| reactomeEnrichment | 0 | 0 | 0 | |
| setParameters | 0 | 0 | 0 | |
| tad_dmel | 0.000 | 0.000 | 0.001 | |
| tad_hg19 | 0.001 | 0.000 | 0.001 | |
| tad_hg38 | 0.000 | 0.000 | 0.001 | |
| tad_mm10 | 0.001 | 0.000 | 0.001 | |
| topEnrichment | 0.001 | 0.000 | 0.000 | |
| writeEnrichment | 0 | 0 | 0 | |