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This page was generated on 2023-02-08 01:15:18 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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INSTALL results for NuPoP on kunpeng1


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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/NuPoP.git to
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raw results

Package 1359/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
NuPoP 2.7.2  (landing page)
Ji-Ping Wang
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/NuPoP
git_branch: master
git_last_commit: b076310
git_last_commit_date: 2022-12-14 18:04:10 -0000 (Wed, 14 Dec 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: NuPoP
Version: 2.7.2
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL NuPoP
StartedAt: 2023-02-06 03:11:08 -0000 (Mon, 06 Feb 2023)
EndedAt: 2023-02-06 03:11:22 -0000 (Mon, 06 Feb 2023)
EllapsedTime: 13.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL NuPoP
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘NuPoP’ ...
** using staged installation
** libs
using Fortran compiler: ‘GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
gfortran  -fPIC  -g -O2  -Wall -c  cvtbfb.f90 -o cvtbfb.o
gfortran  -fPIC  -g -O2  -Wall -c  cvtbfbNL4.f90 -o cvtbfbNL4.o
cvtbfbNL4.f90:13:51:

   13 |   real*8    freqN4(4,4,4,4),tranN4(5:147,4,4,4,4,4),freqL4(4,4,4,4)
      |                                                   1
Warning: Array ‘trann4’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gfortran  -fPIC  -g -O2  -Wall -c  vtbfb.f90 -o vtbfb.o
gfortran  -fPIC  -g -O2  -Wall -c  vtbfbNL4.f90 -o vtbfbNL4.o
vtbfbNL4.f90:13:51:

   13 |   real*8    freqN4(4,4,4,4),tranN4(5:147,4,4,4,4,4),freqL4(4,4,4,4)
      |                                                   1
Warning: Array ‘trann4’ at (1) is larger than limit set by ‘-fmax-stack-var-size=’, moved from stack to static storage. This makes the procedure unsafe when called recursively, or concurrently from multiple threads. Consider increasing the ‘-fmax-stack-var-size=’ limit (or use ‘-frecursive’, which implies unlimited ‘-fmax-stack-var-size’) - or change the code to use an ALLOCATABLE array. If the variable is never accessed concurrently, this warning can be ignored, and the variable could also be declared with the SAVE attribute. [-Wsurprising]
gcc -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o NuPoP.so cvtbfb.o cvtbfbNL4.o vtbfb.o vtbfbNL4.o -lgfortran -lm -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-NuPoP/00new/NuPoP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (NuPoP)