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This page was generated on 2023-02-08 01:15:18 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
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To the developers/maintainers of the OmnipathR package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/OmnipathR.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1382/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| OmnipathR 3.7.1 (landing page) Denes Turei
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | TIMEOUT | skipped | |||||||||
| Package: OmnipathR |
| Version: 3.7.1 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR |
| StartedAt: 2023-02-06 03:05:38 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 03:05:54 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 15.6 seconds |
| RetCode: 0 |
| Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL OmnipathR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘OmnipathR’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location [2023-02-06 03:05:50] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:50] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:50] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:50] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-02-06 03:05:50] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:50] [TRACE] [OmnipathR] Contains 52 files. [2023-02-06 03:05:50] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-02-06 03:05:50] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:50] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:51] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:51] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-02-06 03:05:51] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-02-06 03:05:51] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:51] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-02-06 03:05:51] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:51] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-02-06 03:05:51] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:51] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-OmnipathR/00new/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-02-06 03:05:51] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:51] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package can be loaded from final location [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [INFO] [OmnipathR] Initialized cache: `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Running on a build server, wiping cache. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Cache is at `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Contains 1 files. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Cache is locked: FALSE. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/.cache/OmnipathR/cache.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [SUCCESS] [OmnipathR] Removing all cache contents from `/home/biocbuild/.cache/OmnipathR`. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Pandoc version: `2.9.2.1`. [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/db/db_def.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/urls.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [TRACE] [OmnipathR] Reading JSON from `/home/biocbuild/bbs-3.17-bioc/R/library/OmnipathR/internal/id_types.json` (encoding: UTF-8). [2023-02-06 03:05:53] [TRACE] [OmnipathR] JSON validation successful: TRUE [2023-02-06 03:05:53] [TRACE] [OmnipathR] Cache locked: FALSE ** testing if installed package keeps a record of temporary installation path * DONE (OmnipathR)