| Back to Build/check report for BioC 3.17 | 
  | 
This page was generated on 2023-02-08 01:15:25 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the RImmPort package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RImmPort.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1671/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RImmPort 1.27.0  (landing page) Zicheng Hu 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: RImmPort | 
| Version: 1.27.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RImmPort_1.27.0.tar.gz | 
| StartedAt: 2023-02-07 13:31:07 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 13:32:27 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 79.2 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: RImmPort.Rcheck | 
| Warnings: 0 | 
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RImmPort_1.27.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/RImmPort.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘RImmPort/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RImmPort’ version ‘1.27.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RImmPort’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildNewSqliteDb: no visible global function definition for
  ‘dbListTables’
Undefined global functions or variables:
  dbListTables
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RImmPort_Article.Rmd’ using ‘UTF-8’... OK
  ‘RImmPort_QuickStart.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/RImmPort.Rcheck/00check.log’
for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RImmPort ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘RImmPort’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RImmPort)
RImmPort.Rcheck/RImmPort-Ex.timings
| name | user | system | elapsed | |
| Events-class | 0.490 | 0.055 | 0.676 | |
| Findings-class | 0.302 | 0.015 | 0.319 | |
| Interventions-class | 0.263 | 0.011 | 0.276 | |
| SpecialPurpose-class | 0.284 | 0.004 | 0.287 | |
| Study-class | 0.363 | 0.004 | 0.367 | |
| TrialDesign-class | 0.260 | 0.008 | 0.268 | |
| buildNewSqliteDb | 0.001 | 0.000 | 0.001 | |
| getAssayDataOfStudies | 0.117 | 0.004 | 0.120 | |
| getDomainCode | 0.001 | 0.000 | 0.001 | |
| getDomainDataOfStudies | 0.050 | 0.000 | 0.051 | |
| getListOfAssayTypes | 0.001 | 0.000 | 0.000 | |
| getListOfDomains | 0 | 0 | 0 | |
| getListOfStudies | 0.043 | 0.004 | 0.047 | |
| getStudiesWithSpecificAssayData | 0.045 | 0.006 | 0.052 | |
| getStudiesWithSpecificDomainData | 0.052 | 0.000 | 0.052 | |
| getStudy | 0.255 | 0.024 | 0.278 | |
| loadSerializedStudyData | 0.005 | 0.000 | 0.007 | |
| mergeDomainAndSupplemental | 0.172 | 0.016 | 0.196 | |
| serialzeStudyData | 0.492 | 0.012 | 0.506 | |
| setImmPortDataSource | 0.048 | 0.000 | 0.051 | |