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This page was generated on 2023-02-08 01:15:25 -0000 (Wed, 08 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
kunpeng1Linux (Ubuntu 22.04.1 LTS)aarch64R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" 4164
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CHECK results for RImmPort on kunpeng1


To the developers/maintainers of the RImmPort package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RImmPort.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1671/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
RImmPort 1.27.0  (landing page)
Zicheng Hu , Ravi Shankar
Snapshot Date: 2023-02-06 00:12:45 -0000 (Mon, 06 Feb 2023)
git_url: https://git.bioconductor.org/packages/RImmPort
git_branch: master
git_last_commit: 84e848b
git_last_commit_date: 2022-11-01 15:12:58 -0000 (Tue, 01 Nov 2022)
kunpeng1Linux (Ubuntu 22.04.1 LTS) / aarch64  OK    OK    OK  

Summary

Package: RImmPort
Version: 1.27.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RImmPort_1.27.0.tar.gz
StartedAt: 2023-02-07 13:31:07 -0000 (Tue, 07 Feb 2023)
EndedAt: 2023-02-07 13:32:27 -0000 (Tue, 07 Feb 2023)
EllapsedTime: 79.2 seconds
RetCode: 0
Status:   OK  
CheckDir: RImmPort.Rcheck
Warnings: 0

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RImmPort_1.27.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/RImmPort.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘RImmPort/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RImmPort’ version ‘1.27.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RImmPort’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
buildNewSqliteDb: no visible global function definition for
  ‘dbListTables’
Undefined global functions or variables:
  dbListTables
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RImmPort_Article.Rmd’ using ‘UTF-8’... OK
  ‘RImmPort_QuickStart.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.17-bioc/meat/RImmPort.Rcheck/00check.log’
for details.



Installation output

RImmPort.Rcheck/00install.out

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RImmPort
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘RImmPort’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RImmPort)

Tests output


Example timings

RImmPort.Rcheck/RImmPort-Ex.timings

nameusersystemelapsed
Events-class0.4900.0550.676
Findings-class0.3020.0150.319
Interventions-class0.2630.0110.276
SpecialPurpose-class0.2840.0040.287
Study-class0.3630.0040.367
TrialDesign-class0.2600.0080.268
buildNewSqliteDb0.0010.0000.001
getAssayDataOfStudies0.1170.0040.120
getDomainCode0.0010.0000.001
getDomainDataOfStudies0.0500.0000.051
getListOfAssayTypes0.0010.0000.000
getListOfDomains000
getListOfStudies0.0430.0040.047
getStudiesWithSpecificAssayData0.0450.0060.052
getStudiesWithSpecificDomainData0.0520.0000.052
getStudy0.2550.0240.278
loadSerializedStudyData0.0050.0000.007
mergeDomainAndSupplemental0.1720.0160.196
serialzeStudyData0.4920.0120.506
setImmPortDataSource0.0480.0000.051