| Back to Build/check report for BioC 3.17 |
|
This page was generated on 2023-02-08 01:15:25 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the RNAdecay package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAdecay.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1687/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RNAdecay 1.19.0 (landing page) Reed Sorenson
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: RNAdecay |
| Version: 1.19.0 |
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RNAdecay |
| StartedAt: 2023-02-06 03:07:21 -0000 (Mon, 06 Feb 2023) |
| EndedAt: 2023-02-06 03:14:27 -0000 (Mon, 06 Feb 2023) |
| EllapsedTime: 426.5 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RNAdecay
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘RNAdecay’ ...
** using staged installation
** libs
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_1sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_dExp_1sse.cpp -o general_dExp_1sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_1sse.so general_dExp_1sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_1sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_1sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_Exp_1sse.cpp -o general_Exp_1sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_1sse.so general_Exp_1sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_2sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_dExp_2sse.cpp -o general_dExp_2sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_2sse.so general_dExp_2sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_2sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_2sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_Exp_2sse.cpp -o general_Exp_2sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_2sse.so general_Exp_2sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_3sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_dExp_3sse.cpp -o general_dExp_3sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_3sse.so general_dExp_3sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_3sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_3sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_Exp_3sse.cpp -o general_Exp_3sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_3sse.so general_Exp_3sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_dExp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_dExp_4sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_dExp_4sse.cpp -o general_dExp_4sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_dExp_4sse.so general_dExp_4sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
/home/biocbuild/bbs-3.17-bioc/R/bin/Rscript --vanilla -e "TMB::compile('general_Exp_4sse.cpp',safebounds=FALSE,safeunload=FALSE)"
using C++ compiler: ‘g++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0’
make[1]: Entering directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
g++ -std=gnu++14 -I"/home/biocbuild/bbs-3.17-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.17-bioc/R/library/TMB/include" -I"/home/biocbuild/bbs-3.17-bioc/R/library/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_general_Exp_4sse -DCPPAD_FRAMEWORK -I/usr/local/include -fPIC -g -O2 -Wall -c general_Exp_4sse.cpp -o general_Exp_4sse.o
g++ -std=gnu++14 -shared -L/home/biocbuild/bbs-3.17-bioc/R/lib -L/usr/local/lib -o general_Exp_4sse.so general_Exp_4sse.o -L/home/biocbuild/bbs-3.17-bioc/R/lib -lR
make[1]: Leaving directory '/home/biocbuild/bbs-3.17-bioc/meat/RNAdecay/src'
[1] 0
installing to /home/biocbuild/bbs-3.17-bioc/R/library/00LOCK-RNAdecay/00new/RNAdecay/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RNAdecay)