| Back to Build/check report for BioC 3.17 | 
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This page was generated on 2023-02-08 01:15:26 -0000 (Wed, 08 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs | 
|---|---|---|---|---|
| kunpeng1 | Linux (Ubuntu 22.04.1 LTS) | aarch64 | R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences" | 4164 | 
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| 
To the developers/maintainers of the RTNsurvival package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RTNsurvival.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page.  | 
| Package 1732/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| RTNsurvival 1.23.0  (landing page) Clarice Groeneveld 
  | kunpeng1 | Linux (Ubuntu 22.04.1 LTS) / aarch64 | OK | OK | OK | |||||||||
| Package: RTNsurvival | 
| Version: 1.23.0 | 
| Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RTNsurvival_1.23.0.tar.gz | 
| StartedAt: 2023-02-07 14:08:06 -0000 (Tue, 07 Feb 2023) | 
| EndedAt: 2023-02-07 14:13:04 -0000 (Tue, 07 Feb 2023) | 
| EllapsedTime: 297.6 seconds | 
| RetCode: 0 | 
| Status: OK | 
| CheckDir: RTNsurvival.Rcheck | 
| Warnings: 0 | 
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### Running command:
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###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:RTNsurvival.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings RTNsurvival_1.23.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/RTNsurvival.Rcheck’
* using R Under development (unstable) (2023-01-14 r83615)
* using platform: aarch64-unknown-linux-gnu (64-bit)
* R was compiled by
    gcc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
    GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0
* running under: Ubuntu 22.04.1 LTS
* using session charset: UTF-8
* checking for file ‘RTNsurvival/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTNsurvival’ version ‘1.23.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RTNsurvival’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘RTNsurvival.Rmd’ using ‘UTF-8’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
RTNsurvival.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL RTNsurvival ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’ * installing *source* package ‘RTNsurvival’ ... ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RTNsurvival)
RTNsurvival.Rcheck/tests/runTests.Rout
R Under development (unstable) (2023-01-14 r83615) -- "Unsuffered Consequences"
Copyright (C) 2023 The R Foundation for Statistical Computing
Platform: aarch64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("RTNsurvival")
RUNIT TEST PROTOCOL -- Tue Feb  7 14:12:35 2023 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
 
1 Test Suite : 
RTNsurvival RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 12.780   0.315  13.131 
RTNsurvival.Rcheck/RTNsurvival-Ex.timings
| name | user | system | elapsed | |
| TNS.data | 0.000 | 0.003 | 0.003 | |
| hclust_semisupervised | 0.075 | 0.009 | 0.086 | |
| tni2tnsPreprocess-methods | 0.281 | 0.016 | 0.297 | |
| tnsAREA3-methods | 2.141 | 0.023 | 2.166 | |
| tnsCox-methods | 2.045 | 0.020 | 2.068 | |
| tnsCoxInteraction-methods | 1.448 | 0.004 | 1.453 | |
| tnsGSEA2-methods | 2.003 | 0.008 | 2.013 | |
| tnsGet-methods | 1.421 | 0.008 | 1.430 | |
| tnsInteraction-methods | 1.410 | 0.012 | 1.425 | |
| tnsKM-methods | 2.068 | 0.008 | 2.078 | |
| tnsKmInteraction-methods | 1.444 | 0.000 | 1.445 | |
| tnsPlotCovariates-methods | 4.073 | 0.128 | 4.235 | |
| tnsPlotCox-methods | 1.509 | 0.016 | 1.526 | |
| tnsPlotCoxInteraction-methods | 1.473 | 0.012 | 1.486 | |
| tnsPlotGSEA2-methods | 3.019 | 0.020 | 3.041 | |
| tnsPlotKM-methods | 1.505 | 0.004 | 1.513 | |
| tnsPlotKmInteraction-methods | 1.440 | 0.000 | 1.441 | |
| tnsPlotSRE-methods | 2.170 | 0.028 | 2.202 | |
| tnsSRD-methods | 1.469 | 0.000 | 1.472 | |
| tnsSRE-methods | 1.492 | 0.012 | 1.505 | |
| tnsStratification | 0 | 0 | 0 | |